Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0529 ATGGCAGCTTTTGCTCTCTCTAACTACACTCTCTTCTCTCCTCGCCCTTCTTCTTCCTTAATTTCTTCTTCCTCCAAAACCCTAGAATCCATATCCCTTACTCAACAGCCTCTTCGTCTTTGTAACCCATTATTAAGTCTCTCTACCACTTCCCATTCTTCTCCAGTTAAACGTTCTTTCGTATCGCATCTTTCTGCTCAAGATTATGTTGCCAATGTAAATAAAGAAGAGGATGATGGAAAAGCTGGGAATAAGGCCGGAGATCAGCTTCATGGATTGAGTTTGCAGGCCCTCATCAATGTATACCGAGATGCTTTACTTGATGGAGATCAGAAGACTGTTTCTGAAGTTGAGGCAAGACTGAAAATAATTGAGAGGGAGAAGAATGGGTTGTTCCAGAAAGTGTCGAATATATCGGCAGAGATAACATCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGAACAGAAAAAGAAGGATATACCGTGAAGAATAAGGCCCAAAAAGAAGTTATTGAAAGTCTATTATCAATGATTGACAGTTTTGAGAAAGCCAGACAACAAATTAATCCTCAAACTGACAAGGAGAAAAAGATTGATGTAAGCTACCAGGGTATATACAAGCAATTTGTCGAGACGCTGAGGAGCTGGCGCGTCTCCGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCCGTGGCACGAGAGGAGTCGCAGGAGATCAAGGAAGGAATCATTATTCAAGAATTACAACGCGGGTTTCTGCTCGGAGAACGAGTTCTAAGACCAGCAAGAGTAAAGGTTTCAAAAGGTCCAGGTAAGAAGAATTCCCCTACAATCGATGCCGAGAAACTGACAGAGCATCCCGCAACTGCTGCTGGAGTAGATGAACACTAA 930 42.04 MAAFALSNYTLFSPRPSSSLISSSSKTLESISLTQQPLRLCNPLLSLSTTSHSSPVKRSFVSHLSAQDYVANVNKEEDDGKAGNKAGDQLHGLSLQALINVYRDALLDGDQKTVSEVEARLKIIEREKNGLFQKVSNISAEITSGKEKYIRLQADFDNFRKRTEKEGYTVKNKAQKEVIESLLSMIDSFEKARQQINPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESQEIKEGIIIQELQRGFLLGERVLRPARVKVSKGPGKKNSPTIDAEKLTEHPATAAGVDEH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6139320 6142705 + Hsped.10g05290.1 Hepe10g0529 581076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0529 309 Gene3D - 109 222 IPR013805 -
Hepe10g0529 309 Pfam GrpE 127 281 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 CDD GrpE 146 279 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 Gene3D Head domain of nucleotide exchange factor GrpE 226 281 IPR009012 GO:0006457(InterPro)
Hepe10g0529 309 MobiDBLite consensus disorder prediction 278 309 - -
Hepe10g0529 309 Coils Coil 107 134 - -
Hepe10g0529 309 PANTHER GRPE PROTEIN 49 281 IPR000740 GO:0000774(InterPro)|GO:0000774(PANTHER)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0042803(InterPro)|GO:0051082(PANTHER)|GO:0051087(InterPro)
Hepe10g0529 309 FunFam Protein GrpE 225 280 - -
Hepe10g0529 309 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 228 283 IPR009012 GO:0006457(InterPro)
Hepe10g0529 309 ProSitePatterns grpE protein signature. 236 279 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 Hamap Protein GrpE [grpE]. 67 281 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 PRINTS GrpE protein signature 233 248 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 PRINTS GrpE protein signature 260 279 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 PRINTS GrpE protein signature 150 166 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 PRINTS GrpE protein signature 178 193 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Hepe10g0529 309 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 132 223 IPR013805 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0529 K03687 - - csv:101215875 421.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0556 Hepe-Chr4:58310114 Hepe10g0529 Hepe-Chr10:6139320 3.74e-57 dispersed
Hepe06g0017 Hepe-Chr6:507785 Hepe10g0529 Hepe-Chr10:6139320 7.13e-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28