Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0546 ATGTCCTCCGCCGATCCGCCTTCCTCCGCCTCCCCTTCCACCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACTCGCCCCGGCCGCCCTAGACCTTCCTCCTCCTCCTCCGCCGACAATCTCGTCGTTAACATGCTTGGATTAGACGGATCCATCATCGAATCGTACCCTAAGTTGATCCTCGGTGAGAGCCGCCGTCTTCCAACCCCTAATCACGGCCCTTGCTCGATTTGCCTCTCCGATTACCAACCTAACGATTCTCTCCGATGCATCCCCGATTGCCACCACTGTTTTCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCTACTTGCCCGATCTGTAGAAATTCCCCTGCTGCTACACCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA 495 57.98 MSSADPPSSASPSTAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPGRPRPSSSSSADNLVVNMLGLDGSIIESYPKLILGESRRLPTPNHGPCSICLSDYQPNDSLRCIPDCHHCFHSDCVDEWLRMSATCPICRNSPAATPVATPLSEFAPLASNAR 164
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 6491903 6492397 - Hsped.10g05460.1 Hepe10g0546 581093
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0546 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 146 IPR013083 -
Hepe10g0546 164 CDD RING-H2_EL5-like 99 141 - -
Hepe10g0546 164 SMART ring_2 99 140 IPR001841 -
Hepe10g0546 164 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Hepe10g0546 164 Pfam Ring finger domain 99 141 IPR001841 -
Hepe10g0546 164 PANTHER RING-H2 FINGER PROTEIN ATL67 1 53 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Hepe10g0546 164 SUPERFAMILY RING/U-box 98 144 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0255 Hepe-Chr1:39040919 Hepe10g0546 Hepe-Chr10:6491903 7.65e-63 dispersed
Hepe05g0457 Hepe-Chr5:6040006 Hepe10g0546 Hepe-Chr10:6491903 3.36e-33 dispersed
Hepe05g1981 Hepe-Chr5:70278527 Hepe10g0546 Hepe-Chr10:6491903 5.38e-28 dispersed
Hepe07g0812 Hepe-Chr7:10003975 Hepe10g0546 Hepe-Chr10:6491903 4.15e-35 dispersed
Hepe10g0546 Hepe-Chr10:6491903 Hepe10g1904 Hepe-Chr10:55831717 3.54e-08 dispersed
Hepe10g0546 Hepe-Chr10:6491903 Hepe05g0814 Hepe-Chr5:21213006 5.78e-77 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0546 - - - 0.0