Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe10g0546 | ATGTCCTCCGCCGATCCGCCTTCCTCCGCCTCCCCTTCCACCGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCCTGCATTCGCGTCAAATCCACTCGCCCCGGCCGCCCTAGACCTTCCTCCTCCTCCTCCGCCGACAATCTCGTCGTTAACATGCTTGGATTAGACGGATCCATCATCGAATCGTACCCTAAGTTGATCCTCGGTGAGAGCCGCCGTCTTCCAACCCCTAATCACGGCCCTTGCTCGATTTGCCTCTCCGATTACCAACCTAACGATTCTCTCCGATGCATCCCCGATTGCCACCACTGTTTTCACTCCGATTGCGTCGATGAATGGCTCCGTATGAGCGCTACTTGCCCGATCTGTAGAAATTCCCCTGCTGCTACACCTGTTGCTACTCCTCTCTCCGAGTTCGCGCCTCTGGCTTCCAATGCCAGGTGA | 495 | 57.98 | MSSADPPSSASPSTAGVGLGYGIAIAVSILVFISTIMLVSYACIRVKSTRPGRPRPSSSSSADNLVVNMLGLDGSIIESYPKLILGESRRLPTPNHGPCSICLSDYQPNDSLRCIPDCHHCFHSDCVDEWLRMSATCPICRNSPAATPVATPLSEFAPLASNAR | 164 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 6491903 | 6492397 | - | Hsped.10g05460.1 | Hepe10g0546 | 581093 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe10g0546 | 164 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 146 | IPR013083 | - | |
| Hepe10g0546 | 164 | CDD | RING-H2_EL5-like | 99 | 141 | - | - | |
| Hepe10g0546 | 164 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
| Hepe10g0546 | 164 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Hepe10g0546 | 164 | Pfam | Ring finger domain | 99 | 141 | IPR001841 | - | |
| Hepe10g0546 | 164 | PANTHER | RING-H2 FINGER PROTEIN ATL67 | 1 | 53 | IPR044289 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
| Hepe10g0546 | 164 | SUPERFAMILY | RING/U-box | 98 | 144 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g0255 | Hepe-Chr1:39040919 | Hepe10g0546 | Hepe-Chr10:6491903 | 7.65e-63 | dispersed | |
| Hepe05g0457 | Hepe-Chr5:6040006 | Hepe10g0546 | Hepe-Chr10:6491903 | 3.36e-33 | dispersed | |
| Hepe05g1981 | Hepe-Chr5:70278527 | Hepe10g0546 | Hepe-Chr10:6491903 | 5.38e-28 | dispersed | |
| Hepe07g0812 | Hepe-Chr7:10003975 | Hepe10g0546 | Hepe-Chr10:6491903 | 4.15e-35 | dispersed | |
| Hepe10g0546 | Hepe-Chr10:6491903 | Hepe10g1904 | Hepe-Chr10:55831717 | 3.54e-08 | dispersed | |
| Hepe10g0546 | Hepe-Chr10:6491903 | Hepe05g0814 | Hepe-Chr5:21213006 | 5.78e-77 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe10g0546 | - | - | - | 0.0 |