Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0566 | ATGGGAAGAGGTAGGGTTCAATTGAAAAGGATTGAGAACAAAATAAACAGACAAGTAACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAAGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAGCGATATGAGAGATATTCTTACATAGGGAGGCAGCAAATTGCTTCTGAATCTGAATTTTCTCAGGAAAATTGGACTCTGGAATATTACAGACTCAAGTCCAAAGTCGAACTTTTACAAAGAAACAATAGTCATTATATGGGAGAAGATTTGGATGCATTGAGCGTAAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGTACGAGAAAAAACCAACTCATGTATGATTCCATCTCTGCACTTCAAAGAAAGGAAAGAGCAATTCAGGAGCAAAACGCACAACTGGCAAAGCAAATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTGTCTTTCCTATTCCCATCAGCTCCTCATCCCTCTCTAAACATTGGGTAA | 645 | 40.0 | MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYIGRQQIASESEFSQENWTLEYYRLKSKVELLQRNNSHYMGEDLDALSVKELQNLEQQIDTALKHVRTRKNQLMYDSISALQRKERAIQEQNAQLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPSAPHPSLNIG | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6750873 | 6757504 | - | Hsped.10g05660.1 | Hepe10g0566 | 581113 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0566 | 214 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
Hepe10g0566 | 214 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 194 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Hepe10g0566 | 214 | Pfam | K-box region | 85 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Hepe10g0566 | 214 | Coils | Coil | 152 | 186 | - | - | |
Hepe10g0566 | 214 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Hepe10g0566 | 214 | SUPERFAMILY | SRF-like | 2 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | Coils | Coil | 126 | 146 | - | - | |
Hepe10g0566 | 214 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Hepe10g0566 | 214 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Hepe10g0566 | 214 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g0915 | Hepe-Chr2:11016076 | Hepe10g0566 | Hepe-Chr10:6750873 | 1.51e-76 | dispersed | |
Hepe08g0613 | Hepe-Chr8:5370745 | Hepe10g0566 | Hepe-Chr10:6750873 | 2.71e-39 | dispersed | |
Hepe10g0566 | Hepe-Chr10:6750873 | Hepe10g1018 | Hepe-Chr10:40374767 | 2.70e-14 | dispersed | |
Hepe10g0566 | Hepe-Chr10:6750873 | Hepe10g0567 | Hepe-Chr10:6769448 | 2.26e-47 | tandem | |
Hepe10g0566 | Hepe-Chr10:6750873 | Hepe07g2444 | Hepe-Chr7:68775594 | 2.49e-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56466 | PF01486 | K-box | 1.70E-28 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0566 | K09264 | - | csv:101219414 | 374.785 |