Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0566 ATGGGAAGAGGTAGGGTTCAATTGAAAAGGATTGAGAACAAAATAAACAGACAAGTAACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAAGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAGCGATATGAGAGATATTCTTACATAGGGAGGCAGCAAATTGCTTCTGAATCTGAATTTTCTCAGGAAAATTGGACTCTGGAATATTACAGACTCAAGTCCAAAGTCGAACTTTTACAAAGAAACAATAGTCATTATATGGGAGAAGATTTGGATGCATTGAGCGTAAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGTACGAGAAAAAACCAACTCATGTATGATTCCATCTCTGCACTTCAAAGAAAGGAAAGAGCAATTCAGGAGCAAAACGCACAACTGGCAAAGCAAATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTGTCTTTCCTATTCCCATCAGCTCCTCATCCCTCTCTAAACATTGGGTAA 645 40.0 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYIGRQQIASESEFSQENWTLEYYRLKSKVELLQRNNSHYMGEDLDALSVKELQNLEQQIDTALKHVRTRKNQLMYDSISALQRKERAIQEQNAQLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPSAPHPSLNIG 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6750873 6757504 - Hsped.10g05660.1 Hepe10g0566 581113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0566 214 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Hepe10g0566 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g0566 214 Pfam K-box region 85 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0566 214 Coils Coil 152 186 - -
Hepe10g0566 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe10g0566 214 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 Coils Coil 126 146 - -
Hepe10g0566 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0566 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0566 214 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0915 Hepe-Chr2:11016076 Hepe10g0566 Hepe-Chr10:6750873 1.51e-76 dispersed
Hepe08g0613 Hepe-Chr8:5370745 Hepe10g0566 Hepe-Chr10:6750873 2.71e-39 dispersed
Hepe10g0566 Hepe-Chr10:6750873 Hepe10g1018 Hepe-Chr10:40374767 2.70e-14 dispersed
Hepe10g0566 Hepe-Chr10:6750873 Hepe10g0567 Hepe-Chr10:6769448 2.26e-47 tandem
Hepe10g0566 Hepe-Chr10:6750873 Hepe07g2444 Hepe-Chr7:68775594 2.49e-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56466 PF01486 K-box 1.70E-28 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0566 K09264 - csv:101219414 374.785