Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0567 ATGGGAAGAGGAAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAAGTTACCTTCACAAAACGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGCGATGCTGAAGTTGCCTTGATCATCTTCTCCACTCGTGGCAAGCTCTATGAATTCTCAAGCTCCTCCAGGCATGTCTCTCTTTGTTTCTTTCGTTTGTTCCTTCGTCTCGGGACGGAGCGGAGAAACAAAGATTACGTTACCAGGGTAATTGCTATAGCTAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCATTGGAAGCCTCCCACCCTCCCAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCCCTACAACATTCACAGAGGCGATTTCTTGGAGAAGAATTGGATGATTTGGAGACAAATGAACTGGATCAACTAGAAATTCAATTGGAAATGTCTCTGAAGCAAATCAGGTCCACTAAGAGCCAAACTATGTTCGATCAGTTATCTGATCTCCACAAAAAAGAAGAATTGCTGCTGGAAACAAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGTAGTGCAGCTGTTCATTCATCATGGGAAACTTCACAGCCCAACAATTTGCAATACTGCCGACAACCTGAGGCCTTTCTTCAACGCAATAATATTGCATTGGAAAATAGTTACAATGTTGCAGAAGTTTCAAATCAAGAAAGTGGTTTAAACTCTGGGCCAGAAGCTAATGGGTTGCCTTCTCACTGGATGATGCTTTGA 804 42.16 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSRHVSLCFFRLFLRLGTERRNKDYVTRVIAIAKTLERYQRHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELDDLETNELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLHKKEELLLETNQALRRKLEESSAAVHSSWETSQPNNLQYCRQPEAFLQRNNIALENSYNVAEVSNQESGLNSGPEANGLPSHWMML 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6769448 6774949 - Hsped.10g05670.1 Hepe10g0567 581114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0567 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 ProSiteProfiles K-box domain profile. 115 205 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0567 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g0567 267 MobiDBLite consensus disorder prediction 245 267 - -
Hepe10g0567 267 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 Pfam K-box region 114 200 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe10g0567 267 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 FunFam Agamous-like MADS-box protein AGL13 13 74 - -
Hepe10g0567 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe10g0567 267 Gene3D - 13 67 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g0567 267 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2444 Hepe-Chr7:68775594 Hepe10g0567 Hepe-Chr10:6769448 2.70e-49 dispersed
Hepe07g2445 Hepe-Chr7:68790461 Hepe10g0567 Hepe-Chr10:6769448 1.65e-64 dispersed
Hepe10g0423 Hepe-Chr10:4743159 Hepe10g0567 Hepe-Chr10:6769448 4.93e-27 dispersed
Hepe10g0567 Hepe-Chr10:6769448 Hepe10g1018 Hepe-Chr10:40374767 4.69e-14 dispersed
Hepe10g0566 Hepe-Chr10:6750873 Hepe10g0567 Hepe-Chr10:6769448 2.26e-47 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56467 PF01486 K-box 3.30E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0567 K09264 - csv:101220998 382.489