Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0572 ATGCCGAGCATTTCGACCCTCTATTCCATTCAAGAAGTATCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATACGACTTGACGTCATATTTGGACGAGCATCCTGGTGGGGATGATGTTATTGTTGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGTTGGTCACAGCAAAGATGCCAGAGAGCTGATGGAGAAGTTCTATATCGGTGAGCTTGATACATCTTCCTTAGAAAGCCCAGAACTCGAAACGGAGCAACTAGTAGACGGTTATGCAGCTCAGGTTCAGGCCTTGACCAAGCAATACTGGGCGGCTCCTGTTGCAGTACTTGGTATTTCTGCAGTACTTGGCTTGTTATACTTGGGCAAAAAGTGA 399 46.37 MPSISTLYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDVGHSKDARELMEKFYIGELDTSSLESPELETEQLVDGYAAQVQALTKQYWAAPVAVLGISAVLGLLYLGKK 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6854369 6856542 - Hsped.10g05720.1 Hepe10g0572 581119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0572 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Hepe10g0572 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Hepe10g0572 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Hepe10g0572 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Hepe10g0572 132 Gene3D - 3 86 IPR036400 -
Hepe10g0572 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Hepe10g0572 132 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 86 IPR036400 -
Hepe10g0572 132 PANTHER CYTOCHROME B5 6 114 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Hepe10g0572 132 SMART Cyt_b5_2 8 81 IPR001199 -
Hepe10g0572 132 FunFam Cytochrome b5 type B 3 85 - -
Hepe10g0572 132 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Hepe10g0572 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0572 K23490 - - csv:101220127 225.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1849 Hepe-Chr6:69606242 Hepe10g0572 Hepe-Chr10:6854369 1.05e-31 dispersed
Hepe08g2621 Hepe-Chr8:68185730 Hepe10g0572 Hepe-Chr10:6854369 4.04e-21 dispersed
Hepe10g0572 Hepe-Chr10:6854369 Hepe03g0349 Hepe-Chr3:5042167 6.87e-35 transposed
Hepe10g0572 Hepe-Chr10:6854369 Hepe05g1755 Hepe-Chr5:67866386 5.00e-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G53560 77.6 4.1e-57 217.6
Hepe05g1755 . 1 133 NADPH P450 reductases AT5G53560 69.2 4.0e-52 201.1
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G53560 69.5 2.4e-49 191.8
Hepe06g1849 . 4 131 NADPH P450 reductases AT5G53560 64.8 1.9e-46 182.2
Hepe05g1755 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.1e-48 186.8
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G48810 63.8 9.9e-46 179.9
Hepe06g1849 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G48810 58.1 2.4e-44 175.3
Hepe05g1755 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.7e-50 195.7
Hepe03g0349 . 22 128 NADPH P450 reductases AT2G32720 79.4 2.1e-45 178.7
Hepe06g1849 . 21 132 NADPH P450 reductases AT2G32720 71.4 1.1e-41 166.4
Hepe06g0817 . 22 131 NADPH P450 reductases AT2G32720 67.0 1.5e-38 156.0
Hepe10g0572 . 1 131 NADPH P450 reductases AT1G26340 57.0 1.1e-38 156.4
Hepe04g0560 . 2 281 NADPH P450 reductases AT5G17770 81.8 6.8e-131 463.8
Hepe05g0611 . 8 286 NADPH P450 reductases AT5G17770 77.8 2.3e-126 448.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G53560 77.6 4.1e-57 217.6
Hepe05g1755 . 1 133 NADPH P450 reductases AT5G53560 69.2 4.0e-52 201.1
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G53560 69.5 2.4e-49 191.8
Hepe06g1849 . 4 131 NADPH P450 reductases AT5G53560 64.8 1.9e-46 182.2
Hepe05g1755 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.1e-48 186.8
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G48810 63.8 9.9e-46 179.9
Hepe06g1849 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G48810 58.1 2.4e-44 175.3
Hepe05g1755 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.7e-50 195.7
Hepe03g0349 . 22 128 NADPH P450 reductases AT2G32720 79.4 2.1e-45 178.7
Hepe06g1849 . 21 132 NADPH P450 reductases AT2G32720 71.4 1.1e-41 166.4
Hepe06g0817 . 22 131 NADPH P450 reductases AT2G32720 67.0 1.5e-38 156.0
Hepe10g0572 . 1 131 NADPH P450 reductases AT1G26340 57.0 1.1e-38 156.4
Hepe04g0560 . 2 281 NADPH P450 reductases AT5G17770 81.8 6.8e-131 463.8
Hepe05g0611 . 8 286 NADPH P450 reductases AT5G17770 77.8 2.3e-126 448.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24