Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0604 ATGTTGTTGGATTGCATCGTCTCTGCTCATAGGTGTGTCGTGAGTAGTCTCACAATCGTTGAAAAAGCTCTTGTTGTGGGTAGTCAGACAATTGATTGTTGCCGCCGTAGGGAAGAGCTCGTGTCGTGGGAAAGCGATTTCTGTTCAAAGTTCAAACCAATGGCTGGAGAAGGTCAAGTGATTGCATGTCATAAGAAACCTGAATGGGATGCTGAATTAGTGAGAGGGAAGCAATCTGGGAAACTGATTGTGGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACGATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCAGTGTGATTTTCCTGAAAGTCGATGTCGATGAATTGAATGCTGTTGCTACCGAGTGGGAGGTTAATGCAATGCCGACCTTTGTTTTCCTGAAAGGAGGGGTAGCAATTCACAAGATTGTCGGTGCCGATAAAGCGGCGCTGTTGAAGAAAATAGAAGAGCTTAAAACTCCAGCAGCAGCTACTTCTACTGCTTAG 525 45.71 MLLDCIVSAHRCVVSSLTIVEKALVVGSQTIDCCRRREELVSWESDFCSKFKPMAGEGQVIACHKKPEWDAELVRGKQSGKLIVVDFTASWCGPCRTIAPYFSELAKNHPSVIFLKVDVDELNAVATEWEVNAMPTFVFLKGGVAIHKIVGADKAALLKKIEELKTPAAATSTA 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7452956 7455731 + Hsped.10g06040.1 Hepe10g0604 581151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0604 174 PANTHER THIOREDOXIN 57 163 IPR050620 -
Hepe10g0604 174 SUPERFAMILY Thioredoxin-like 38 165 IPR036249 -
Hepe10g0604 174 Pfam Thioredoxin 63 162 IPR013766 -
Hepe10g0604 174 CDD TRX_family 68 162 - -
Hepe10g0604 174 ProSitePatterns Thioredoxin family active site. 84 102 IPR017937 -
Hepe10g0604 174 Gene3D Glutaredoxin 44 170 - -
Hepe10g0604 174 ProSiteProfiles Thioredoxin domain profile. 60 166 IPR013766 -
Hepe10g0604 174 PRINTS Thioredoxin family signature 130 141 - -
Hepe10g0604 174 PRINTS Thioredoxin family signature 91 100 - -
Hepe10g0604 174 PRINTS Thioredoxin family signature 83 91 - -
Hepe10g0604 174 FunFam Thioredoxin 57 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0604 K03671 - - csv:101212030 192.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1652 Hepe-Chr1:81723113 Hepe10g0604 Hepe-Chr10:7452956 9.79e-43 dispersed
Hepe02g3267 Hepe-Chr2:82279790 Hepe10g0604 Hepe-Chr10:7452956 2.67e-29 dispersed
Hepe10g0549 Hepe-Chr10:6513498 Hepe10g0604 Hepe-Chr10:7452956 2.35e-08 dispersed
Hepe10g0602 Hepe-Chr10:7430764 Hepe10g0604 Hepe-Chr10:7452956 9.31e-48 dispersed
Hepe10g0604 Hepe-Chr10:7452956 Hepe10g1704 Hepe-Chr10:53739406 7.33e-32 dispersed
Hepe10g0603 Hepe-Chr10:7446386 Hepe10g0604 Hepe-Chr10:7452956 2.35e-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56