Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0607 ATGCAACATTGCCACCACTACCGCCACCACCGTCCGATTACCTCCGCCACCGCCGCCGCCAATTTGAAATTATTCTTTAATAATTCAACCATGATCATTACTAAGCTTTTATTGGCCTTTGCCTTCTGCCGTTTGATGGCCACCGTCGGACTCAACATGGGCCCGGCCGCCGCGCTTCCCCACCTCGGTATCGACGGCCTCCTCACCGTCAACCCCTCCGACGTCCAAGCCGCTTCTACCGATTTCGGCCTCATCACTCAGAATCCGCCTCTTGCCGTCTTGCACCCGGCCTCCGCCGACGACGTTGCCAGATTGGTCCGAGCGGCGGCGACGGCGACGGAGTATGCTGGGTTTACGGTGTCGGCGAGAGGGCACGGACATTCGATAAACGGGCAGGCGCAGACGGGGAATGGTGTAGTGATTGAGATGAGCGGCGGCGGCGGCGGCGGGGGGAGAGGTTTTCCGCCGCTACCTGTGGTGTCGGAGAAAGGGATGTTTGTGGACGTGTGGGGTGGAGAGCTGTGGATTGATGTGTTGAATTCGACGTTGGGGTATGGCTTGGCGCCGAGATCATGGACGGATTATTTGTATTTGTCGGTCGGCGGGACGCTATCCAACGGCGGGATCAGCGGCCAGGCCTTCAACCATGGTCCTCAAATCAGCAATGTCCATGAACTCGACGTCGTCACAGGAAATGGAGAGCTAGTGACATGTTCAAATGAAGAAAATCCAGATCTTTTCCACGCAGTTCTTGGTGGATTAGGACAATTTGGGATCATTACACGAGCAAGAATCATTCTCGAACCAGCTCCTCAAAGGGTGAGATGGATTAGAGTATTGTACTCAAATTTCACAGCTTTCACAAAGGATCAAGAAAGGCTAATATCTGTGCATGCAAAACCAAAGAGTGAGAAATTTGATTACGTGGAGGGATTTGTGATCGTTGATGAAGGCCTAATCAACAACTGGAGATCATCCTTCTTTTCACCGGCTAATCCGGTCAAAATCTCCTCCTTGAAGAAGGCTGATGGGGGAGTTTTATACTGCTTGGAGATCACCAAAAACTACCATGAATCCGCATCTCACACCGTTGATCAGGAAGTAGAGGCATTATTGAAGGAACTGAATTACATACCCGAGTCGGTTTTTACAACGGACTTAGGTTACGTGGACTTCCTGGACCGGGTTCACAAGGCCGAGTTGAAGCTCCGGTCCAAGGGCTTGTGGGAGGTCCCACATCCATGGCTCAACCTCTTCGTCCCAAAGTCGAGAATCGCCGATTTTGACCGAGGAGTTTTCAAGGGCATTTTAGGAAATAACACCAGTGGGCCCATCCTCATCTACCCTATGAACAAGCATAAGTGGGACCCGAGAAGCTCCGCTGTGACCCCGGAGGATGATGTGTTCTACCTCGTGGCGTTGCTGCGGTCGGCGCTCGACAATGGAGAGCCGACGCAGTCGTTGGAGTATTTGAGCAATCAGAATCATCAGATACTAGCATTCTGTTCCGAGGAGGGGATCGAAGTGAAACAGTATTTGCCTCACTACACGACGGAGGAGGAGTGGGCAGAACACTTCGGCGATAAGTGGTTGGAGTTTCAGCGGAGGAAGATGAAGTTTGATCCGCGCCACATTCTAGCCACCGGACAGAGGATATTTTCGCCCTCCGTGTCGGTAGACATGGCGGTATCGTCCTTGTGA 1701 52.5 MQHCHHYRHHRPITSATAAANLKLFFNNSTMIITKLLLAFAFCRLMATVGLNMGPAAALPHLGIDGLLTVNPSDVQAASTDFGLITQNPPLAVLHPASADDVARLVRAAATATEYAGFTVSARGHGHSINGQAQTGNGVVIEMSGGGGGGGRGFPPLPVVSEKGMFVDVWGGELWIDVLNSTLGYGLAPRSWTDYLYLSVGGTLSNGGISGQAFNHGPQISNVHELDVVTGNGELVTCSNEENPDLFHAVLGGLGQFGIITRARIILEPAPQRVRWIRVLYSNFTAFTKDQERLISVHAKPKSEKFDYVEGFVIVDEGLINNWRSSFFSPANPVKISSLKKADGGVLYCLEITKNYHESASHTVDQEVEALLKELNYIPESVFTTDLGYVDFLDRVHKAELKLRSKGLWEVPHPWLNLFVPKSRIADFDRGVFKGILGNNTSGPILIYPMNKHKWDPRSSAVTPEDDVFYLVALLRSALDNGEPTQSLEYLSNQNHQILAFCSEEGIEVKQYLPHYTTEEEWAEHFGDKWLEFQRRKMKFDPRHILATGQRIFSPSVSVDMAVSSL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7502147 7507595 + Hsped.10g06070.1 Hepe10g0607 581154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0607 566 ProSiteProfiles PCMH-type FAD-binding domain profile. 86 270 IPR016166 GO:0071949(InterPro)
Hepe10g0607 566 FunFam Cytokinin dehydrogenase 2 273 512 - -
Hepe10g0607 566 SUPERFAMILY FAD-linked oxidases, C-terminal domain 271 553 IPR016164 GO:0003824(InterPro)|GO:0050660(InterPro)
Hepe10g0607 566 Pfam FAD binding domain 90 239 IPR006094 GO:0050660(InterPro)
Hepe10g0607 566 SUPERFAMILY FAD-binding/transporter-associated domain-like 65 269 IPR036318 GO:0050660(InterPro)
Hepe10g0607 566 Gene3D - 72 553 IPR016167 -
Hepe10g0607 566 Gene3D - 143 272 IPR016169 -
Hepe10g0607 566 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 271 553 IPR015345 GO:0009690(InterPro)|GO:0019139(InterPro)|GO:0050660(InterPro)
Hepe10g0607 566 Gene3D - 273 512 IPR016170 -
Hepe10g0607 566 PANTHER GULONOLACTONE OXIDASE 48 554 IPR050432 GO:0016491(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0607 K00279 - - csv:101212272 911.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1915 Hepe-Chr1:83962545 Hepe10g0607 Hepe-Chr10:7502147 9.70e-155 dispersed
Hepe05g0812 Hepe-Chr5:21073162 Hepe10g0607 Hepe-Chr10:7502147 1.78e-175 dispersed
Hepe09g0876 Hepe-Chr9:8725530 Hepe10g0607 Hepe-Chr10:7502147 5.63e-168 dispersed
Hepe09g0877 Hepe-Chr9:8760771 Hepe10g0607 Hepe-Chr10:7502147 1.47e-161 dispersed
Hepe10g0607 Hepe-Chr10:7502147 Hepe08g2666 Hepe-Chr8:68702469 2.50e-176 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34