Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0628 ATGTCTCGTCGGAGCGGTTTCTCGCAGGTTCATACAGCGATAGCGATGAGTGTTCTCGCGGTGGTGTTCGTGGCGGAGGCGAAGACGGCGATTCTGATCACCGTCGATCAATCAGGTAAAGGAAATTTTACGAAGATTCAAGAGGCGATCGACGCGGTGCCGGAAAATAACTTGGAGGAGGTGTTTATCGCGGTGAAGCCGGGGATTTACAGAGAGAAAGTGATCGTTCCGGCGAACAAACCGTTCATTACGATCAGTGGAAGAAAAGCGATTGATACGATCATAAGTTGGAATGATAGCAAAAACACTTATAATTCTGCAACTCTTGCTGTTCTTGCCTCTGATTTCGTTGGACGATACCTCACAATTCAGAACGGGTACGGGCCGGGTGCGCAAGCGGTAGCATTACGGGTATCCGGAGACAGAGTCACATTGATAGCATGCAGATTTGTGGGGCATCAGGACACTCTTCTTGATGACATTGGCCGCCATTACTACAAAAACTGTTACATACAAGGAGCCACCGATTTCATATGCGGAAACGCAGCTTCACTTTTCGAGAATTGCCATCTGCATTCAGTGTCGGACGACGTCGGGACGATCACGGCCCAACGGAGGGAGTCGCCGTCGGAGAATACGGGGTTCGTTTTCATGGGGTGTAAGATCACCGGAACCAACTCCGCCGTTTTGGGAAGGCCGTGGGGAGCCTTTTCTAGGGTTGTGTTTGGATACACATATATGTCTGAAGTTATTCTCCCTCAGGGTTGGGATGATTGGCAAGACGCATCCAAACAAAGCACTGTGTACTATGGGCAATACAAATGTTATGGAAAAGGAGCCAATCCATCAAGAAGGGTAACATGGTCATTTAAAAACATGACCAGTCAAGAAGCTGCACCATTCTTCACCAAAACCTTCATTGGCGCTGCAGATTGGCTCAGGCCTTTACCAAGCAGTTTCAAGAGAGCCTTCTCTTCCAAACCCTAA 987 48.63 MSRRSGFSQVHTAIAMSVLAVVFVAEAKTAILITVDQSGKGNFTKIQEAIDAVPENNLEEVFIAVKPGIYREKVIVPANKPFITISGRKAIDTIISWNDSKNTYNSATLAVLASDFVGRYLTIQNGYGPGAQAVALRVSGDRVTLIACRFVGHQDTLLDDIGRHYYKNCYIQGATDFICGNAASLFENCHLHSVSDDVGTITAQRRESPSENTGFVFMGCKITGTNSAVLGRPWGAFSRVVFGYTYMSEVILPQGWDDWQDASKQSTVYYGQYKCYGKGANPSRRVTWSFKNMTSQEAAPFFTKTFIGAADWLRPLPSSFKRAFSSKP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7799371 7803943 + Hsped.10g06280.1 Hepe10g0628 581175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0628 328 FunFam Pectinesterase 27 317 - -
Hepe10g0628 328 SUPERFAMILY Pectin lyase-like 29 319 IPR011050 -
Hepe10g0628 328 Pfam Pectinesterase 33 308 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe10g0628 328 Gene3D - 27 322 IPR012334 -
Hepe10g0628 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 18 314 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0628 K01051 - - csv:101215800 570.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0628 Hepe-Chr10:7799371 Hepe10g0809 Hepe-Chr10:16410601 2.41e-56 dispersed
Hepe03g0353 Hepe-Chr3:5071472 Hepe10g0628 Hepe-Chr10:7799371 2.86e-78 transposed
Hepe05g0306 Hepe-Chr5:3781638 Hepe10g0628 Hepe-Chr10:7799371 4.79e-80 transposed
Hepe05g1373 Hepe-Chr5:62495464 Hepe10g0628 Hepe-Chr10:7799371 3.43e-70 transposed
Hepe06g1672 Hepe-Chr6:67755019 Hepe10g0628 Hepe-Chr10:7799371 5.76e-86 transposed
Hepe07g0693 Hepe-Chr7:8222214 Hepe10g0628 Hepe-Chr10:7799371 3.66e-87 transposed
Hepe07g0878 Hepe-Chr7:11264453 Hepe10g0628 Hepe-Chr10:7799371 1.24e-58 transposed
Hepe08g0178 Hepe-Chr8:1549825 Hepe10g0628 Hepe-Chr10:7799371 6.29e-65 transposed
Hepe09g0821 Hepe-Chr9:8035990 Hepe10g0628 Hepe-Chr10:7799371 1.08e-94 transposed
Hepe09g0961 Hepe-Chr9:9736003 Hepe10g0628 Hepe-Chr10:7799371 1.06e-77 transposed
Hepe10g1874 Hepe-Chr10:55549607 Hepe10g0628 Hepe-Chr10:7799371 1.14e-83 transposed
Hepe10g0628 Hepe-Chr10:7799371 Hepe08g1012 Hepe-Chr8:9642761 2.36e-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51