Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0633 ATGGATATGAGAGAACAAGAGAAGGAAGTAATAATACCTGGTGCTTCCGGCGGCGGAGCTGGCGGTGGTGGTTATGGTCATATTTTTGGAGAAACCTCGTCGGGAGGTGTTGTGGAAAGGAGAGTAGAGTCGTCTTCGATTCATAATGGTTCTTCTCATCATCATATCCAAACGGACCATCTCGACGGTGGCGACCGTGTTACGGCTACTGGAGAGAATGTTAGCGGCGGAGGTGGTGGTGGTGGTGGAGGTGGAGGTGGAGGTGGAGGTAATTTTTCCTCTGGTGGTAGATCTAAGGTGCGGGGGGTGGTTTCGGGAGTTAGGTATCGTGAATGTTTAAAGAATCACGCAGCGAGCGTTGGAGGGAATATTTACGACGGATGCGGCGAGTTTATGCCGAGTGGTGAAGATGGAACCCTAGAGGCTTTGAAATGCGCCGCTTGTGAATGTCACCGGAACTTCCACCGGAAAGAAATCGACGGCGAGACTCAATTGAATATCAGTCCTAATTACAGAAGAGGACTAATGTTGAACCATCTCCAGCTTCCTCCGCCATTACCCTCCCCCTCCGCTCTCCACGGTCACCATAAATTCTCCATGGCATTGAACCTCCATTCCAGTCCTACCGCTCCGATCATCGCTCCGATGAATGTCGCCTTCGCCGGTGGAGGCGGATGCGGCGGCGGAACTGAGTCCTCCAGCGAGGATTTGAACGTCTTCCACTCCAATGCCGAGGTCATGATTTCGCCGTCTTCCTACTCCTTGTCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGATCAAAAGGATCGGATGCTCGAGTTCGCGGAGAAAGTCGGATGGAGGATTCAGAAGCAAGACGAAGAAGATGTGGAAAGATTCTGTTCGGAAGTCGGAGTGAAACGGCAAGTTCTCAAAGTCTGGATGCACAACAACAAGAACACGATGAAGAAGCCGAACGAAAATCACGAACCAGATAACCTCGCCGGTGCCGGCGTCGCCGTGACGAGTGAATCGTAA 1020 51.76 MDMREQEKEVIIPGASGGGAGGGGYGHIFGETSSGGVVERRVESSSIHNGSSHHHIQTDHLDGGDRVTATGENVSGGGGGGGGGGGGGGGNFSSGGRSKVRGVVSGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGETQLNISPNYRRGLMLNHLQLPPPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAFAGGGGCGGGTESSSEDLNVFHSNAEVMISPSSYSLSKKRFRTKFTQDQKDRMLEFAEKVGWRIQKQDEEDVERFCSEVGVKRQVLKVWMHNNKNTMKKPNENHEPDNLAGAGVAVTSES 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7943709 7945385 - Hsped.10g06330.1 Hepe10g0633 581180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0633 339 SUPERFAMILY Homeodomain-like 249 318 IPR009057 -
Hepe10g0633 339 Gene3D - 245 318 - -
Hepe10g0633 339 MobiDBLite consensus disorder prediction 1 97 - -
Hepe10g0633 339 FunFam Zinc-finger homeodomain protein 2 245 318 - -
Hepe10g0633 339 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 108 159 IPR006456 -
Hepe10g0633 339 Pfam ZF-HD protein dimerisation region 107 159 IPR006456 -
Hepe10g0633 339 NCBIfam homeobox domain, ZF-HD class 257 314 IPR006455 -
Hepe10g0633 339 MobiDBLite consensus disorder prediction 314 339 - -
Hepe10g0633 339 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 109 158 IPR006456 -
Hepe10g0633 339 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 89 315 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0633 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1409 Hepe-Chr4:69733318 Hepe10g0633 Hepe-Chr10:7943709 6.91e-53 dispersed
Hepe07g1387 Hepe-Chr7:45655355 Hepe10g0633 Hepe-Chr10:7943709 6.76e-53 dispersed
Hepe07g2329 Hepe-Chr7:67622894 Hepe10g0633 Hepe-Chr10:7943709 8.21e-35 dispersed
Hepe09g0122 Hepe-Chr9:956621 Hepe10g0633 Hepe-Chr10:7943709 8.40e-25 dispersed
Hepe10g0451 Hepe-Chr10:5146378 Hepe10g0633 Hepe-Chr10:7943709 1.14e-53 dispersed
Hepe10g0633 Hepe-Chr10:7943709 Hepe10g1740 Hepe-Chr10:54226269 6.72e-35 dispersed
Hepe10g0633 Hepe-Chr10:7943709 Hepe04g1519 Hepe-Chr4:70729031 9.94e-60 wgd
Hepe10g0633 Hepe-Chr10:7943709 Hepe07g0719 Hepe-Chr7:8640262 4.15e-62 wgd
Hepe10g0633 Hepe-Chr10:7943709 Hepe07g2509 Hepe-Chr7:69424108 3.84e-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56473 PF04770 ZF-HD_dimer 6.00E-30 No_clan Hepe TF