Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0647 ATGTCTTTTTCTTCACTCTCCGGCAAGCTCACCCTTCTAGCTCTTCTTTCTGCCTCCACTTTCTATTGCTTCTACAAGTCCCGCCGTCTCAGAAAGCTTCAACACTCCTTAAACCCTACGGTTTCTTCTCGCAGACCCAAACTTTTCTTCATTTCCCAAACTGGTACTTCAAACGCCCTAGCTCAACGCCTGCTCGACGTTTTGAATTCGAATGGGTTGGCGTTTGATCTCGTCGATCCCAAGGATTACGAGCCTGAAGATCTTTTCAAGGAGAGTTTAGTTTTGTTCGTTGCTTCCACTTGGGAAGATGGAGCACCGCCTTCTCATGCTAAATTCTTCTCGAATTGGCTTTCTGAAAGCGCGGAGGATTTCAGAGTCGGTTCCTTGTTGCTTTCTCAGTGTAATTTTGCTGTGTTCGGCGTTGGGAGTCGAGCTTATGGAGAGACGTTCAATGCGGTTGCTAGGGATTTTTCCAAGCGGATGAAGGCATTGGGTGCGAAGGAGATTGTAGCGGTTGGTGAAGGAGATGTTGATGGAGGTGATGTAGATAAGTATTTTGATGATTGGAGTCGGCAATTGCTGAAGGTTTTGAACGTCAATGCGGAAGGAAGTGGTGCGGAGTTATATTCAGGGATTGCTGGGGACAGTGATGCTGAAAGTTGTGAGGATGATGAAGAAGATTCCGACCAGGCGGAGGACATTGTTGATCTTGAGGATATTGCTGGTAAGGGTCCTTCAAGGAAGTCGACGAATGTAGCCGAAACTAATGGGAAATTGAATGGGAAAAAAATTATGGTAACCCCGGTGATTAGAGCGAGCTTAGAAAAGCAGGGATATAAAATTATTGGCACACATAGCGGTGTGAAGATATGTAGATGGACAAAGTCTCAGCTTCGTGGACGAGGAGGTTGCTATAAACATTCATTTTATGGCATAGAAAGTCATCGATGCATGGAGGCAACTCCTAGTTTGGCTTGTGCCAACAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCGGTAGGGAAGAGTTGGCAGTGGGAGATGGATGATCCATTGGATATTGTGAATACTGCAATAGACTTGCACAGAAAAATGATCAAGCAAATGAAAGGTGTTCCAGGTGTTACGCAGGAGAGATTGGATGAAGGCCTTTCTCCAAGACATTGTGCCTTATCTCTTGTTGGTGAACCTATTATGTACCCAGAGATTAATACACTTGTTGATGAATTGCACCGAAGGCGGATTTCAACCTTTTTAGTAACAAATGCTCAGTTTCCCGATAAAATACAATTGCTGAAACCAATCACCCAGTTGTATGTAAGTGTAGATGCTGCGACGAAAGATACCTTGAAGGCAATTGATAGACCACTTTTTGGGGACTTCTGGGAGCGATTCATTGATTCCTTGAAAGCCCTAAATGACAAGCAACAGCGAACAGTTTATCGATTGACATTGGTAAAAGGGTGGAACACAGAAGATATTGATGCCTATTGGAATCTCTTTAGCACTGGTAGACCTGATTTTGTAGAAATCAAAGGCGTCACATATTGTGGATCATCTACTACTTCAAAGCTGACAATGGAGAACGTTCCTTGGCATTCTGATGTGAAGTCATTTTCTGAGGCTTTAGCTGCAAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCACTCATGTTGCGTTCTTTTGGCTAAAACGGACAAATTTAGGGTCGATGGCCAATGGTTCACTTGGATAGATTATGAGAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCATGGGCTGTATATGGCTCTGACGAAGGTGGATTTGATCCTGATCAATCTCGGTACCGGAAGGAGCGACATCATAGACCGAAACCCACATCCTGA 1917 44.34 MSFSSLSGKLTLLALLSASTFYCFYKSRRLRKLQHSLNPTVSSRRPKLFFISQTGTSNALAQRLLDVLNSNGLAFDLVDPKDYEPEDLFKESLVLFVASTWEDGAPPSHAKFFSNWLSESAEDFRVGSLLLSQCNFAVFGVGSRAYGETFNAVARDFSKRMKALGAKEIVAVGEGDVDGGDVDKYFDDWSRQLLKVLNVNAEGSGAELYSGIAGDSDAESCEDDEEDSDQAEDIVDLEDIAGKGPSRKSTNVAETNGKLNGKKIMVTPVIRASLEKQGYKIIGTHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPLDIVNTAIDLHRKMIKQMKGVPGVTQERLDEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIQLLKPITQLYVSVDAATKDTLKAIDRPLFGDFWERFIDSLKALNDKQQRTVYRLTLVKGWNTEDIDAYWNLFSTGRPDFVEIKGVTYCGSSTTSKLTMENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKFHDLVASGKPFDSKDYMAPTPSWAVYGSDEGGFDPDQSRYRKERHHRPKPTS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8599710 8618315 + Hsped.10g06470.1 Hepe10g0647 581194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0647 638 CDD Radical_SAM 322 502 - -
Hepe10g0647 638 Gene3D - 25 206 IPR029039 -
Hepe10g0647 638 ProSiteProfiles Flavodoxin-like domain profile. 46 194 IPR008254 GO:0010181(InterPro)
Hepe10g0647 638 SFLD Radical SAM 261 573 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Hepe10g0647 638 ProSiteProfiles Radical SAM core domain profile. 310 553 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Hepe10g0647 638 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 253 582 - -
Hepe10g0647 638 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 9 633 IPR034556 GO:0008033(InterPro)|GO:0031591(PANTHER)|GO:0051539(InterPro)
Hepe10g0647 638 SFLD tRNA wybutosine-synthesizing 261 573 IPR034556 GO:0008033(InterPro)|GO:0051539(InterPro)
Hepe10g0647 638 Pfam Wyosine base formation 505 568 IPR013917 -
Hepe10g0647 638 SUPERFAMILY Radical SAM enzymes 323 513 - -
Hepe10g0647 638 Pfam Radical SAM superfamily 324 496 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Hepe10g0647 638 SUPERFAMILY Flavoproteins 46 197 IPR029039 -
Hepe10g0647 638 PRINTS Flavodoxin signature 47 60 IPR001094 GO:0010181(InterPro)
Hepe10g0647 638 PRINTS Flavodoxin signature 158 177 IPR001094 GO:0010181(InterPro)
Hepe10g0647 638 PRINTS Flavodoxin signature 95 106 IPR001094 GO:0010181(InterPro)
Hepe10g0647 638 PRINTS Flavodoxin signature 133 143 IPR001094 GO:0010181(InterPro)
Hepe10g0647 638 Pfam Flavodoxin 48 189 IPR008254 GO:0010181(InterPro)
Hepe10g0647 638 Gene3D Aldolase class I 249 580 IPR013785 -
Hepe10g0647 638 MobiDBLite consensus disorder prediction 211 230 - -
Hepe10g0647 638 MobiDBLite consensus disorder prediction 600 638 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0647 K15449 - - csv:101217239 1147.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34