Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0659 ATGGTATCGGCGGAGAACAATAATTCTCCAACGGCGGAATTATCGGCGAAGAAGAAGCGTAATCTGCCGGGAATGCCAGATCCAACGGCGGAAGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCGACGAACAGATTCGTGTGCGAGATCTGCAAGAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGCGGCCATAACTTGCCGTGGAAGCTCCGGCAGCGGACGAGCAACGAGATACGGAAACGAGTGTATATCTGTCCGGAGGCTAGTTGCGTGCATCACAATCCAGGGAGAGCACTCGGCGATCTCACCGGCATCAAAAAGCACTTCTCGAGAAAGCACTGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGATTGGAAAGCGCATATGAAAACCTGCGGAACTAGAGAGTATAAATGCGATTGCGGAACTTTGTTTTCGAGGAGGGATAGTTTCATAACGCATCGGGCGTTTTGTGATGCTTTGGCGTTTGTAAGCTCGGATTCGAATGCGCTGCCAGCCACGGCGGCCGCCTCCGCTGCGGTTGAATCTTCGCCTTCCGCCACCGAGCTATCTCCTGCTTTGTCGATTCAAAGCTCAGAACCACCGGACAATCTCATCGGACTTCCGCCCCTAACAGCAACAGTCACAACCTTAACCACGGCTGCAGCCTCCAACACAACACACGGCAGCGGCACGAGCGTTTTCGCCGGTGTATTTGCTTCTCCTCCTTCCGTCAGCCAATCAGAAGGCGTCAACAATAATCCCACATCGCTATCTCTCTTCCTCTCCTGTAGAGCCGCCTCAGGCTCCTCCATCTTTCAGGACCATCCACCACATTTCTCACCGTCGCCCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCAGCCCAAATGGGTGTCACCGCCTCCAACTCCGCCAGCTCTTTGATGACGGCTGGACTCGGACTTGGATTTGGGAGCCAGCCCACGACAAGGGATCTCCTTGGACTCGGCATGGGCGCCGGCGCCGCCGGTGGGGATTCCACCGCCAGACTTTCTGCTCTTTTCACGTCCTTTGGTGGTGGATACGACGTTGAAGCTGATGCACCTTACGGCGGCGGGACTAATGGTTTATGA 1161 55.9 MVSAENNNSPTAELSAKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYICPEASCVHHNPGRALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFVSSDSNALPATAAASAAVESSPSATELSPALSIQSSEPPDNLIGLPPLTATVTTLTTAAASNTTHGSGTSVFAGVFASPPSVSQSEGVNNNPTSLSLFLSCRAASGSSIFQDHPPHFSPSPQPAAMSATALLQKAAQMGVTASNSASSLMTAGLGLGFGSQPTTRDLLGLGMGAGAAGGDSTARLSALFTSFGGGYDVEADAPYGGGTNGL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8737679 8740558 + Hsped.10g06590.1 Hepe10g0659 581206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0659 386 SUPERFAMILY beta-beta-alpha zinc fingers 45 143 IPR036236 -
Hepe10g0659 386 Pfam Zinc finger, C2H2 type 46 68 IPR013087 -
Hepe10g0659 386 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Hepe10g0659 386 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 148 179 - -
Hepe10g0659 386 MobiDBLite consensus disorder prediction 1 29 - -
Hepe10g0659 386 SMART c2h2final6 46 68 IPR013087 -
Hepe10g0659 386 SMART c2h2final6 87 117 IPR013087 -
Hepe10g0659 386 SMART c2h2final6 122 142 IPR013087 -
Hepe10g0659 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Hepe10g0659 386 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 121 145 - -
Hepe10g0659 386 MobiDBLite consensus disorder prediction 1 15 - -
Hepe10g0659 386 FunFam protein indeterminate-domain 12-like 25 93 - -
Hepe10g0659 386 Gene3D Classic Zinc Finger 42 69 - -
Hepe10g0659 386 FunFam protein indeterminate-domain 5, chloroplastic-like 100 179 - -
Hepe10g0659 386 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 83 117 - -
Hepe10g0659 386 Gene3D Classic Zinc Finger 80 170 - -
Hepe10g0659 386 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 323 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0682 Hepe-Chr7:7966054 Hepe10g0659 Hepe-Chr10:8737679 2.60e-105 dispersed
Hepe10g0659 Hepe-Chr10:8737679 Hepe10g1107 Hepe-Chr10:43772864 2.02e-98 dispersed
Hepe07g2566 Hepe-Chr7:70116971 Hepe10g0659 Hepe-Chr10:8737679 3.65e-71 transposed
Hepe01g1698 Hepe-Chr1:82072650 Hepe10g0659 Hepe-Chr10:8737679 1.96e-127 wgd
Hepe10g0659 Hepe-Chr10:8737679 Hepe04g1493 Hepe-Chr4:70556596 2.17e-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56475 PF00096 zf-C2H2 0.0073 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0659 K25869 - csv:101217471 538.88