Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0677 ATGGCGAGCGGGTTTGGGGAATCGACGAGTAGGCAACCCCAAAGCCCTTCGTGTTCTGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACTCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCACATTCATACCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAGAAATTGGTTCCTTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCAAAAAGTTTTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCATTTTCCTCACAATGGGTTTGGATTTATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACGAGGTTCGGTAATTTCACATTGTCTGCGGCTTTTGGTGGTCTTGTTCCATCTTTATTCAACTTCCAGATGCATGGATATTCAGATCCAAGCATGTATGGTGCAGGTGCTAACATTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTCGCCTTAATCTGGCAATAG 693 45.45 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHTHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSFPGINIPNRPAGQRPEAAGPPPEPNHFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYSDPSMYGAGANIPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8965466 8966158 + Hsped.10g06770.1 Hepe10g0677 581224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0677 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Hepe10g0677 230 CDD RING-HC_AtRMA-like 28 72 - -
Hepe10g0677 230 MobiDBLite consensus disorder prediction 1 20 - -
Hepe10g0677 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 220 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Hepe10g0677 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Hepe10g0677 230 MobiDBLite consensus disorder prediction 84 121 - -
Hepe10g0677 230 SUPERFAMILY RING/U-box 26 83 - -
Hepe10g0677 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Hepe10g0677 230 SMART ring_2 30 70 IPR001841 -
Hepe10g0677 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1379 Hepe-Chr1:79015205 Hepe10g0677 Hepe-Chr10:8965466 6.52e-30 dispersed
Hepe04g1849 Hepe-Chr4:73469259 Hepe10g0677 Hepe-Chr10:8965466 2.57e-29 dispersed
Hepe08g0538 Hepe-Chr8:4689284 Hepe10g0677 Hepe-Chr10:8965466 6.62e-32 dispersed
Hepe02g1269 Hepe-Chr2:15841140 Hepe10g0677 Hepe-Chr10:8965466 2.05e-24 transposed
Hepe05g0517 Hepe-Chr5:7080281 Hepe10g0677 Hepe-Chr10:8965466 5.53e-29 transposed
Hepe10g0677 Hepe-Chr10:8965466 Hepe04g1181 Hepe-Chr4:67074355 1.81e-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0677 K10666 - csv:101221027 460.685