Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0690 ATGTTTACCTCCACAAACCATAACATGATCATCCACACCAACACCACGGCGGCTCCGCCATTGCCGGACCTCTCCTTGCAGATTAGTCCACCGTCGGATTCCGGCAGCAGCAGCAGCGATCTCAGCCATGACAATGCTGCTACTGCTACTGCTGGGCTTTTTCTTCCGGCCAAACCCCATTTGGGTTTAGCCGTTGAGCAGCTTGAAAGAAGCTTCAATGGCCGCCATTTTCACAACCACAACCACCACCATCAAACTCAAATCTATGGTCGCCATTTCAAGAGAGGTTCAAAAATGGCGTTTGGGATTAAAAGAAGCATTAGAGCTCCCAGAATGAGATGGACTACCACTCTTCATGCTCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAACAACTGATTCAGTGTTGAAGAACCAAAGGCAAGAAGTTGATCCAAGTGGTGTCTCAAATAATTGTGAGATTTCTAACCCACCACTTACAATGTGGAAAAGCCCTGATCAAATGAAGTTGTTCTCTTCATCAATGGAGACAAATCAAGAAATGACGACCAGATGGAATCAACATTGCAAGAACAGTATTGGAAACAACCAGCAGCAGGAGCAGAACCGACACAATGCAAGCATCAAGATCTCGAGTGGTGTGAAGATGCAGAAATTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATGCCGATAATTTGTATAATAATAATCTTAACTTAGACTTTACTCTTGGATGCCCAAATTCTCTAACTATGGATTCTAATTCTGAACTTCCCCTTCTCAAATGCTAA 912 44.08 MFTSTNHNMIIHTNTTAAPPLPDLSLQISPPSDSGSSSSDLSHDNAATATAGLFLPAKPHLGLAVEQLERSFNGRHFHNHNHHHQTQIYGRHFKRGSKMAFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKTTDSVLKNQRQEVDPSGVSNNCEISNPPLTMWKSPDQMKLFSSSMETNQEMTTRWNQHCKNSIGNNQQQEQNRHNASIKISSGVKMQKLEGSCLSLCDHHADNLYNNNLNLDFTLGCPNSLTMDSNSELPLLKC 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9119845 9122691 - Hsped.10g06900.1 Hepe10g0690 581237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0690 303 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 289 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Hepe10g0690 303 MobiDBLite consensus disorder prediction 1 43 - -
Hepe10g0690 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 163 IPR006447 GO:0003677(InterPro)
Hepe10g0690 303 FunFam Myb family transcription factor 108 166 - -
Hepe10g0690 303 Gene3D - 109 166 - -
Hepe10g0690 303 Pfam Myb-like DNA-binding domain 111 162 IPR001005 -
Hepe10g0690 303 SUPERFAMILY Homeodomain-like 107 164 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0690 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0993 Hepe-Chr6:57694093 Hepe10g0690 Hepe-Chr10:9119845 3.43e-34 dispersed
Hepe06g1799 Hepe-Chr6:69069954 Hepe10g0690 Hepe-Chr10:9119845 2.71e-33 dispersed
Hepe07g2334 Hepe-Chr7:67687470 Hepe10g0690 Hepe-Chr10:9119845 9.99e-31 dispersed
Hepe08g0562 Hepe-Chr8:4898102 Hepe10g0690 Hepe-Chr10:9119845 1.46e-18 dispersed
Hepe09g1430 Hepe-Chr9:27131565 Hepe10g0690 Hepe-Chr10:9119845 1.30e-16 dispersed
Hepe01g1720 Hepe-Chr1:82393847 Hepe10g0690 Hepe-Chr10:9119845 5.40e-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56479 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Hepe TF