Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0703 ATGCCATCGAACGGCCCTGATTCGCAGCCACAGCAGCAAACGGCGCATCAAACGGAGCAGAATCAACCACCGCACAAACAACCGCAGCAACAGCGGTGGATGGCGATGCAGTACCCGGCGGCGGCGATGATAATGCAGCATCCGATGATGCCGCCGCAGCATTACGTGCCTCCGCCTTCACCACACTATATTTCCTACCGTCAATACCCGTCGCCGCATCAGCTTAATGGCCAGCAGCAGCAGCCACACCAGGGATCCTCCAGCGAGAACAAAGCTATTTGGGTTGGCGATTTGCAGCATTGGATGGATGAGAATTACCTCCATAACTGTTTCGCTTCCACCGGCGAGATTGCTTCCATTAAAGTCATTCGTAATAAGCAAACTGGTATATCAGAAGGCTATGGATTTGTAGAATTTTTCTCTCATACAACAGCAGAGAAAGTTCTGCAGAACTATTCTACAATTTTGATGCCTAATACTGAGCAAACTTTCCGGCTAAACTGGGCAACATTTAGCACTGGTGACAAGCGTTCAGAAAATGGTTCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTACTGATAGTACACTGCATGAAATTTTTGCTAGTAAATATTCATCTGTCAAAGCAGCAAAAGTTGTCTATGATCCAAATACTGGTTGTTCAAAAGGTTATGGTTTTGTGAGGTTTGGTGATGATAATGAGAGGTCTCAGGCCATGACTGAAATGAATGGCGTATATTGCTCAAGCAGGCCCATGCGCATTGGTGCAGCGACACCTAAAAAGTCCTCTGGATATCAGCAGCAATATTCTTCACAAGGATATGCATCAAATGGTTCATACACCCATGGACACCAGTCTGATGGAGATTCTACAAATACAACTATTTTCATTGGAGGGCTTGATCCCAATGTTACTGATGACGATCTTAGGCAGCTCTTTTCTCTGCATGGTGACATAGTATCTGTTAAGATACCACTTGGAAAAGGTTGTGGTTTTATTCAATTTGCGAACAGAAAGAATGCTGAAGAGGCGTTGCAGAAATTAAATGGATCTGTGATTGGCAAGCAAACAGTACGTCTTTCTTGGGGACGAAGTCCGGCAAATAAGCAGCACCGAGCTGATTATAGTAACCACTGGGGGGGTGGAGCCTACTATGGAGGGCAAGTGTATGGCGGATATGGATACGCTCTGCCGCTACCTTATGATCAGCCAACCATGTATGCTGCCGCAGCATATGGAGGTTACCCTATGTATGGCACCCATCAACAGCAAGTGAACTGA 1293 45.78 MPSNGPDSQPQQQTAHQTEQNQPPHKQPQQQRWMAMQYPAAAMIMQHPMMPPQHYVPPPSPHYISYRQYPSPHQLNGQQQQPHQGSSSENKAIWVGDLQHWMDENYLHNCFASTGEIASIKVIRNKQTGISEGYGFVEFFSHTTAEKVLQNYSTILMPNTEQTFRLNWATFSTGDKRSENGSDLSIFVGDLAADVTDSTLHEIFASKYSSVKAAKVVYDPNTGCSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPKKSSGYQQQYSSQGYASNGSYTHGHQSDGDSTNTTIFIGGLDPNVTDDDLRQLFSLHGDIVSVKIPLGKGCGFIQFANRKNAEEALQKLNGSVIGKQTVRLSWGRSPANKQHRADYSNHWGGGAYYGGQVYGGYGYALPLPYDQPTMYAAAAYGGYPMYGTHQQQVN 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9382242 9386423 - Hsped.10g07030.1 Hepe10g0703 581250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0703 430 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Hepe10g0703 430 CDD RRM2_SECp43_like 183 262 - -
Hepe10g0703 430 SMART rrm1_1 92 167 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 SMART rrm1_1 298 365 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 SMART rrm1_1 185 259 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 369 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 SUPERFAMILY RNA-binding domain, RBD 167 290 IPR035979 GO:0003676(InterPro)
Hepe10g0703 430 Gene3D - 285 400 IPR012677 -
Hepe10g0703 430 SUPERFAMILY RNA-binding domain, RBD 58 173 IPR035979 GO:0003676(InterPro)
Hepe10g0703 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 Pfam RNA recognition motif 186 255 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 Pfam RNA recognition motif 93 160 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 Pfam RNA recognition motif 299 362 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 MobiDBLite consensus disorder prediction 52 89 - -
Hepe10g0703 430 Gene3D - 90 170 IPR012677 -
Hepe10g0703 430 MobiDBLite consensus disorder prediction 67 89 - -
Hepe10g0703 430 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Hepe10g0703 430 Gene3D - 171 279 IPR012677 -
Hepe10g0703 430 SUPERFAMILY RNA-binding domain, RBD 289 398 IPR035979 GO:0003676(InterPro)
Hepe10g0703 430 CDD RRM1_SECp43_like 94 172 - -
Hepe10g0703 430 MobiDBLite consensus disorder prediction 1 32 - -
Hepe10g0703 430 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 76 370 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
Hepe10g0703 430 FunFam Polyadenylate-binding protein RBP47 279 400 - -
Hepe10g0703 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723(InterPro)
Hepe10g0703 430 MobiDBLite consensus disorder prediction 264 291 - -
Hepe10g0703 430 MobiDBLite consensus disorder prediction 261 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0703 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2026 Hepe-Chr7:64455134 Hepe10g0703 Hepe-Chr10:9382242 5.28e-127 dispersed
Hepe08g1069 Hepe-Chr8:10395109 Hepe10g0703 Hepe-Chr10:9382242 4.47e-152 dispersed
Hepe10g0703 Hepe-Chr10:9382242 Hepe05g1786 Hepe-Chr5:68149809 1.98e-06 dispersed
Hepe06g1673 Hepe-Chr6:67760285 Hepe10g0703 Hepe-Chr10:9382242 6.46e-130 transposed
Hepe08g2568 Hepe-Chr8:67321986 Hepe10g0703 Hepe-Chr10:9382242 9.91e-08 transposed
Hepe10g1301 Hepe-Chr10:48795728 Hepe10g0703 Hepe-Chr10:9382242 2.01e-12 transposed
Hepe01g1741 Hepe-Chr1:82571237 Hepe10g0703 Hepe-Chr10:9382242 2.68e-178 wgd
Hepe10g0703 Hepe-Chr10:9382242 Hepe03g0770 Hepe-Chr3:22004437 2.95e-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117