Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0706 ATGGATGAAGCAACAAATATTGTAGCATTGCAGCCTCCAACTTTTGGAAATCTTATTACAATTTTGAGCATTGATGGAGGTGGAATAAGAGGAATTATTCCAGGAACAATTCTTACTTTTTTGGAATCTGAGCTTCAGGTTAAGAAAAACCCTGGTTTGGATGCTTTGTTGTCGGATATATGTCTTTCTACTTCGGCAGCACCTACTTATCTTCCCGCTCATCACTTTAAAACTAAGGATGTTGTTGCTGGAACTGTGAGAGACTTCAACCTTGTTGATGGTGGTGTTGCTGCTAATAATCCGACTCTACTGGCTGTGGGTGAAATAACAAAGGAGATTATAAAACAAAGCCCCGACTTCTTCCCTATAAAACCAATGGACTACCGGAGATTCCTGGTGATATCTCTCGGCACCGGAGCTCCGAAGGCGGAGATGAAATTCACGGCGGAGCAAGCAGCCAGTTGGGGGCTGTTCGGATGGCTGACCGCTGGCGGCACCACCCCGATAATCGACGCCTTTTATCAGGCTAGCTCTGACATGGTGGATTTCCATCTCTCCGTGGTTTTTCAAGCCCTTCATTGTGAAGACAATTACCTCCGAATTCAGGACGATAAGCTAAGCAATGAAGTGTCGACGCTGGACGAGGCTACAAACAAGAATTTGGAAGGTCTTGTAAAAGTAGGGGAAGCGCTTTTGAAAAAACCAGTTTCAAAAGTGAATCTAGAGACAGGGATCTTTCAGACTTCTAATTCAGAGAGCAACGAAGAGGCTCTTATCAGGTTTGCTAAACTGCTGTCGGATGAGAGGCGGCTCCGCCATGCTAGGTCTCCTCATGGAAAAGCTGCAAGTTTCAAGGGAATTCAATTGACTGTTTCTTAA 879 44.82 MDEATNIVALQPPTFGNLITILSIDGGGIRGIIPGTILTFLESELQVKKNPGLDALLSDICLSTSAAPTYLPAHHFKTKDVVAGTVRDFNLVDGGVAANNPTLLAVGEITKEIIKQSPDFFPIKPMDYRRFLVISLGTGAPKAEMKFTAEQAASWGLFGWLTAGGTTPIIDAFYQASSDMVDFHLSVVFQALHCEDNYLRIQDDKLSNEVSTLDEATNKNLEGLVKVGEALLKKPVSKVNLETGIFQTSNSESNEEALIRFAKLLSDERRLRHARSPHGKAASFKGIQLTVS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9480544 9485477 + Hsped.10g07060.1 Hepe10g0706 581253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0706 292 Gene3D Cytosolic phospholipase A2 catalytic domain 50 277 - -
Hepe10g0706 292 Gene3D Cytosolic phospholipase A2 catalytic domain 11 49 - -
Hepe10g0706 292 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 1 106 IPR002641 GO:0006629(InterPro)
Hepe10g0706 292 PANTHER XYLOSE ISOMERASE 10 46 - GO:0004620(PANTHER)|GO:0047372(PANTHER)
Hepe10g0706 292 SUPERFAMILY FabD/lysophospholipase-like 53 245 IPR016035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0706 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0706 Hepe-Chr10:9480544 Hepe10g0819 Hepe-Chr10:16825065 5.58e-83 dispersed
Hepe10g0706 Hepe-Chr10:9480544 Hepe10g0708 Hepe-Chr10:9516409 1.95e-134 proximal
Hepe10g0705 Hepe-Chr10:9439565 Hepe10g0706 Hepe-Chr10:9480544 5.54e-131 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g793 . . . . . . . . Cmo05g00202 . . . . . Sed05g3372 . . Bhi04g00317 Tan02g1889 . . Hepe10g0706 . Lcy13g2036 . . . . . . . . . . . . . . . Blo17g00842 . Bda08g01335 . . . . . . . . . Cma05g00202 Car05g00168 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000078 10 10 9 9 5 8 5 14 15 10 6 9 10 8 10 11 9 4 5 10 8 4 8 12 10 10 13 7 9 15 273