Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0716 ATGTTTAATAATACTTCCCTCCAACTCATTTCTCAAAATAGTGGGAAGTTAACGGTCGACTGCCAATCAATTTTCCGTACGAAATCAAATATACCGAAGCTCCTCATTTCTGCTATTCGTCTTCTCCCTGTTTCCCAAACCCTAAGAAGCGAGGAAGAGGAAGAAGAAGAAGAAGAGACCATGGGGATCGCTAACCTCTCCTACGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCTTTACTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAATCTTCCCCTAGTAAGCAGGCCAAGCCTCGCGTGACGCAGAAACAACTGGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAATCAGCGCCTGTTTACGCTGAAGTTCTTGTCAATCGCGTGGTGATTCCTAGAAGGACCTCCAGAGCAAGAGATTTTTCAGACCAGTTTTATGCTTCGGATGGAGCAAGAAAAGACGCCTTTGAAAGAGCTGAGCAACTACAATCTGGGTTTGAGCCGAATTATCCTAGCTGTATAAAGTCAATGGTTCGGTCTCATGTTAGTGGTTGTTTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGTGCCTTCCAAAAAATGATGGAGTAATGAATTTAATAGATGAAGATGGCGATGAGTATCCAATAATATATTTGGCACGAAAAACAGGATTTAGTGGGGGATGGAAGGGTTTTTCAATTGCTCATAAATTGGCAGATGGGGATGCTGTGGTATTTCAAGTCATTAAACCTACAACCTGCAAGGTGTACATCCTTAGGGCGAATAGTTCCACAGAAGACAGTGATTCTAACAGTAGCTAA 870 44.14 MFNNTSLQLISQNSGKLTVDCQSIFRTKSNIPKLLISAIRLLPVSQTLRSEEEEEEEEETMGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKQAKPRVTQKQLVVVRRSSRVAKQSAPVYAEVLVNRVVIPRRTSRARDFSDQFYASDGARKDAFERAEQLQSGFEPNYPSCIKSMVRSHVSGCFWLGLPSHFCKTCLPKNDGVMNLIDEDGDEYPIIYLARKTGFSGGWKGFSIAHKLADGDAVVFQVIKPTTCKVYILRANSSTEDSDSNSS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9594584 9637794 + Hsped.10g07160.1 Hepe10g0716 581263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0716 289 Coils Coil 66 86 - -
Hepe10g0716 289 Gene3D - 165 280 IPR015300 -
Hepe10g0716 289 Pfam B3 DNA binding domain 188 277 IPR003340 GO:0003677(InterPro)
Hepe10g0716 289 SMART B3_2 187 278 IPR003340 GO:0003677(InterPro)
Hepe10g0716 289 SUPERFAMILY DNA-binding pseudobarrel domain 180 278 IPR015300 -
Hepe10g0716 289 ProSiteProfiles B3 DNA-binding domain profile. 187 278 IPR003340 GO:0003677(InterPro)
Hepe10g0716 289 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 279 IPR044837 -
Hepe10g0716 289 CDD B3_DNA 185 276 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0475 Hepe-Chr7:4897169 Hepe10g0716 Hepe-Chr10:9594584 7.77e-36 dispersed
Hepe10g0716 Hepe-Chr10:9594584 Hepe10g1440 Hepe-Chr10:51154731 1.11e-35 dispersed
Hepe10g0716 Hepe-Chr10:9594584 Hepe02g0579 Hepe-Chr2:5887397 3.49e-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56483 PF02362 B3 1.20E-11 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0716 - - - 0.0