Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0780 ATGGGTTCCAAATCCCAAATCCTATTGAACCCACAAGCTTTGTTTGAAGATGAAGATCATCATGATCAAGCATCAGCAGAAGAAGCAGCACATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACTTTACTTTTTTCCAACTTCCTTCAATCCCTCAACAAACTCATTCTCCTTCCTCTCCATTTGACCCTCCTAATTTCTCCACCTCCTCCAATAATAATAATAACACTAATCTCTCTCAAACCCTACTTTCTTCTTCTTCTCCTTTTTTGCCTCTCAAGCCCTCCCACTCTTCTGATTTTGCACCTCAACACCTACTTTCATTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAAGTTGGAGAGAGGTTGATGAGTGGGAAGAGAAATAATAATGAGTATCAATTGGGAGTTTCAACAATGAAGATGAAGAAGATGAAGGGAAGAAGAAAGGTGAGAGAGCCAAGATTCTCATTCAAGACCATGAGTGATGTGGATGTTCTTGATGATGGTTACAAATGGCGAAAGTACGGACAGAAAGTGGTCAAAAACACACAGCATCCTAGAAGCTATTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCCCATGATTCTGAAGACTCTGAAGCTCAA 717 40.31 MGSKSQILLNPQALFEDEDHHDQASAEEAAHSQMGFFNFPSNFTFFQLPSIPQQTHSPSSPFDPPNFSTSSNNNNNTNLSQTLLSSSSPFLPLKPSHSSDFAPQHLLSLQTSTPNLWPWGEVGERLMSGKRNNNEYQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14879773 14881196 - Hsped.10g07800.1 Hepe10g0780 581327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0780 239 SUPERFAMILY WRKY DNA-binding domain 162 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0780 239 ProSiteProfiles WRKY domain profile. 165 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0780 239 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 232 IPR044810 GO:0003700(InterPro)
Hepe10g0780 239 SMART WRKY_cls 170 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0780 239 MobiDBLite consensus disorder prediction 50 83 - -
Hepe10g0780 239 FunFam WRKY transcription factor 57 156 230 - -
Hepe10g0780 239 Pfam WRKY DNA -binding domain 171 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g0780 239 Gene3D WRKY domain 157 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g2102 Hepe-Chr5:71598058 Hepe10g0780 Hepe-Chr10:14879773 2.00e-45 dispersed
Hepe10g0586 Hepe-Chr10:7122456 Hepe10g0780 Hepe-Chr10:14879773 5.85e-31 dispersed
Hepe10g0780 Hepe-Chr10:14879773 Hepe10g1775 Hepe-Chr10:54519892 4.02e-23 dispersed
Hepe10g0780 Hepe-Chr10:14879773 Hepe10g0789 Hepe-Chr10:15256032 5.30e-23 proximal
Hepe10g0780 Hepe-Chr10:14879773 Hepe04g1154 Hepe-Chr4:66707519 4.66e-55 wgd
Hepe10g0780 Hepe-Chr10:14879773 Hepe05g1187 Hepe-Chr5:57725446 1.93e-27 wgd
Hepe10g0780 Hepe-Chr10:14879773 HepeContig66g0148 Hepe-ChrContig66:11912492 4.31e-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56485 PF03106 WRKY 4.00E-24 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0780 - - - 0.0