Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe10g0823 | ATGTCATCGTCAAATTCACCGTGCGCAGCGTGCAAATTCCTCCGGCGAAAATGCACACAAGAATGCGTATTCGCACCGTATTTCCCACCGGATCAGCCACAGAAATTCTCCAACGTGCACAAGGTGTTCGGCGCAAGCAACGTGGCGAAGCTTCTGAACGAACTGAATGCAACCCAGCGGGAGGACGCGGTGAACTCACTAGCCTACGAGGCCGAGTACCGTTTGCGCGACCCGGTGTACGGCTGCGTGGGCTTAATCTCAGTCCTCCAGCACAAGCTAAAGCAAATGCAAAGCGACCTTTACAATGCTAAGAAAGAACTGGCAGCTTACATTGGTCCTCAAGCTCTGCTCCCAATTCTCCAGCCTCCATCCCCCATGATGGCGCCTCAAGGGACGACCACCGGCAGCCCCTCCTCCTCCACCATTCTGCCTTACAACATGTCCCCCATGTTGGGGATTAACATTCCTCCTCCTGCCCAACAACAAATGCTCATTCGTGAATCCCCTCAGCAACACCACCACCAAATACAACAACAACATCAACACCAACACCAACACCAACAACAATTGTTCGAGGCACAGCAGTTGGCGGCCGCGGCTGCACGAGAGCAGCAAGAAATGTTTAGAGCTTACGAGCAGGAGCAGAAACAAACACAACAACGACAACATGAGCTCTTGAGGTTCACTGGGTTCGACCCGGCTGGGACGGGTGGCGGTGGCGGTGGCGGTGGTGGGTTTAATCATCATCAGATGAATTCAGGTTCTAATTTGACATTGGGGACTTTTGTTGATAATAGCTACCAAATTCAGCAATCACAACCTGAACATTCACATTCTCACTCACATCACCATCAACATCAGCAGCAGCTTCAGGTACAGCTATTTCTTCAACCACAACAAACACAAGTTGAGCAAATCCACAAGCCTGAAGCTACTACTACTGCAGATGATGGTAGGAATATTAACATTGGCCCATCTTGTTAA | 984 | 50.51 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFSNVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELAAYIGPQALLPILQPPSPMMAPQGTTTGSPSSSTILPYNMSPMLGINIPPPAQQQMLIRESPQQHHHQIQQQHQHQHQHQQQLFEAQQLAAAAAREQQEMFRAYEQEQKQTQQRQHELLRFTGFDPAGTGGGGGGGGGFNHHQMNSGSNLTLGTFVDNSYQIQQSQPEHSHSHSHHHQHQQQLQVQLFLQPQQTQVEQIHKPEATTTADDGRNINIGPSC | 327 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 16976909 | 16977892 | + | Hsped.10g08230.1 | Hepe10g0823 | 581370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe10g0823 | 327 | Coils | Coil | 86 | 106 | - | - | |
| Hepe10g0823 | 327 | MobiDBLite | consensus disorder prediction | 167 | 194 | - | - | |
| Hepe10g0823 | 327 | Coils | Coil | 201 | 221 | - | - | |
| Hepe10g0823 | 327 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 198 | - | - | |
| Hepe10g0823 | 327 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Hepe10g0823 | 327 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
| Hepe10g0823 | 327 | MobiDBLite | consensus disorder prediction | 269 | 290 | - | - | |
| Hepe10g0823 | 327 | MobiDBLite | consensus disorder prediction | 167 | 198 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe08g2048 | Hepe-Chr8:57459279 | Hepe10g0823 | Hepe-Chr10:16976909 | 1.33e-57 | dispersed | |
| Hepe09g0225 | Hepe-Chr9:1949857 | Hepe10g0823 | Hepe-Chr10:16976909 | 1.63e-50 | dispersed | |
| Hepe04g2027 | Hepe-Chr4:75067510 | Hepe10g0823 | Hepe-Chr10:16976909 | 1.08e-33 | transposed | |
| Hepe10g0823 | Hepe-Chr10:16976909 | Hepe05g0787 | Hepe-Chr5:18624782 | 1.47e-29 | wgd | |
| Hepe10g0823 | Hepe-Chr10:16976909 | HepeContig66g0098 | Hepe-ChrContig66:6830429 | 2.23e-149 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 56487 | PF03195 | LOB | 3.50E-41 | No_clan | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe10g0823 | - | - | - | 0.0 |