Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0832 ATGCATTGTTCTAATAGTTTCTCTTTATTTCTGAGTAACAATGTGGTTATCTCTTCCATCCGCAAAAAAAATTATCAGAATATTTCCATTAAAGGTTTGCATTCCTTTCACCATAATAAACAAGAGAAACCCATCAAACTATTCAGTAGAAAGCCGAGGAAAGGAACTAAGGTAGTTAAGAAGGAAGAAGTAGATCCAAAGCTTTACACGAGAGATACAGTAAGGAACATATACAATCTTCTGAGAAATTGCTCATGGAGTTCTGCTCAAGAACACCTAGTGAGGTTCCCTATAAGATGGGATTCTTATCTCATCAACCAGGTTCTGAAAATGCATCCCCCATTGGAGAAGGCATGGTTGTTCTTCAATTGGGCCTCTAGGCTGCGAATCTTCAAGCATGACCACTATACGTACACGACGATGCTGGATATTTTTGGAGAAGCTGGGAGAATTTCATCCATGAATTATGTATTTCAACTGATGAAGGAGAAGGGGATGAAGATAGATGCAGTTACTCATACTTCATTAATGCACTGGCGTTCAAACTCGGGGGATGTTGATGGGGCTATAAAGGTTTGGAAGGAAATGAAAGCCAATGGCTGCTATCCGACGATAGTTTCGTATACTGCTTATATAAAGATTTTGTTGGACAATGACCAAGTTAAGGAGGCCACTGATACATACAAGGAGATGCTTCAATCTGGGCTTTCTCCAAATTGCTGTACTTACACCGTCTTAATGGAATACCTTATTGGAGCGGGTAAATGCAAAGAAGCCCTTGATATTTTTCACAAAATGCAAGATGCTGGAGTATATCCTGATAAAGCAGCTTTCAATATATTGATTCAGAAATGCTGTAAATCAGGGGAGATGCTGGTAATGACACAAATCCTTGAGTACATGAAAGAAAAAGGTCATGTCCTTCGATACCCTGTGTTTGTTGAAGCACTTGAAACTTTAAAAAGTTGTTCTGTAAGTGATACCCTACTCAGGCAAGTTAATCCTCATATAGAAACTGAATCAGTCAGTAAGGGTGAGGTTGTGAATGTTAGTACAAGTTCTAATGTTATTCCTCCCAATGTAGATAATGAGCTTGTTGCAATTCTGTTGAAGGAGGATAAACTTATTGCTGTTGATCACATACTCATTGGGACGATAGATAAGAACATACAGTTGGATTCTTCAATTATTTCATCCATCATTGAGGTAAATTGCAAACGTAATCGACCTAACAGTGCTCTGCTGGCGTTCAACTACTGTTTAAGAAACGGTGTTAACATTGAGAGAAATCTGTATCTTGGCTTGATCGGGATTCTGATCCGATCGAGTATATATTTGAAGTTGCTGGAAATTGTTCAGGAAATGTATAGGCAAGGGCATTGTCTTGGACTCTATCATGCCACACTTATACTTTATAGTCTTGGCAAAGCTGGAAAACCTCAATATGCTTTGAAAGTTTTTAATATGTTGCCTGAAGAATTGAAGTGCACTGCAACTTACACTGCTCTGGTTGATGCTTATTTCTCTGCTGGAAGTTCTGGTAAAGGGCTTAAAATTTACGAAACAATGCGAAAGAAAGGATTTACACCATCTTTAGGCACATATAATGTGTTGTTAACTGGTCTTGTGAAGAGTGGTAGGGTTGTTGAATTAGATATTTATAGAAGGGAGAAGAAGAGTTTTGAGATCAGTCATCATTCTCATCATAATACAATTCTAGAGGAAGAAAGGATTTGTGACCTTCTTTTTGGAGAGTTAGTATCTTGA 1767 38.09 MHCSNSFSLFLSNNVVISSIRKKNYQNISIKGLHSFHHNKQEKPIKLFSRKPRKGTKVVKKEEVDPKLYTRDTVRNIYNLLRNCSWSSAQEHLVRFPIRWDSYLINQVLKMHPPLEKAWLFFNWASRLRIFKHDHYTYTTMLDIFGEAGRISSMNYVFQLMKEKGMKIDAVTHTSLMHWRSNSGDVDGAIKVWKEMKANGCYPTIVSYTAYIKILLDNDQVKEATDTYKEMLQSGLSPNCCTYTVLMEYLIGAGKCKEALDIFHKMQDAGVYPDKAAFNILIQKCCKSGEMLVMTQILEYMKEKGHVLRYPVFVEALETLKSCSVSDTLLRQVNPHIETESVSKGEVVNVSTSSNVIPPNVDNELVAILLKEDKLIAVDHILIGTIDKNIQLDSSIISSIIEVNCKRNRPNSALLAFNYCLRNGVNIERNLYLGLIGILIRSSIYLKLLEIVQEMYRQGHCLGLYHATLILYSLGKAGKPQYALKVFNMLPEELKCTATYTALVDAYFSAGSSGKGLKIYETMRKKGFTPSLGTYNVLLTGLVKSGRVVELDIYRREKKSFEISHHSHHNTILEEERICDLLFGELVS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17632294 17634946 - Hsped.10g08320.1 Hepe10g0832 581379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0832 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Hepe10g0832 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Hepe10g0832 588 Gene3D Tetratricopeptide repeat domain 101 222 IPR011990 GO:0005515(InterPro)
Hepe10g0832 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Hepe10g0832 588 Gene3D Tetratricopeptide repeat domain 387 581 IPR011990 GO:0005515(InterPro)
Hepe10g0832 588 Pfam Pentatricopeptide repeat domain 161 215 IPR002885 -
Hepe10g0832 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Hepe10g0832 588 Pfam PPR repeat family 241 287 IPR002885 -
Hepe10g0832 588 Pfam PPR repeat family 496 544 IPR002885 -
Hepe10g0832 588 NCBIfam pentatricopeptide repeat 499 531 IPR002885 -
Hepe10g0832 588 NCBIfam pentatricopeptide repeat 136 170 IPR002885 -
Hepe10g0832 588 NCBIfam pentatricopeptide repeat 241 274 IPR002885 -
Hepe10g0832 588 NCBIfam pentatricopeptide repeat 206 240 IPR002885 -
Hepe10g0832 588 NCBIfam pentatricopeptide repeat 277 307 IPR002885 -
Hepe10g0832 588 NCBIfam pentatricopeptide repeat 171 204 IPR002885 -
Hepe10g0832 588 Gene3D Tetratricopeptide repeat domain 232 306 IPR011990 GO:0005515(InterPro)
Hepe10g0832 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Hepe10g0832 588 PANTHER OS03G0856100 PROTEIN 86 567 - -
Hepe10g0832 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0832 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0832 Hepe-Chr10:17632294 HepeContig66g0086 Hepe-ChrContig66:6065726 1.62e-316 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g913 Blo04g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01018 . Sed01g0084 . . . . . . . . Bhi10g02231 Tan07g1031 Cmetu11g0453 . Hepe10g0832 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010326 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31