Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0900 ATGAAGATATGTTTAGGAATAGTAAAGGGGTTGTCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAAAGATATTAAAGCTACTAATGTTCTACTTGATGGAAGCTTGAATGCCCAGATCTCCGACTTTGGGTTGGCTAAGCTTGATGAAGAGGAGAACACCCATATCAGCACAAGAATTGCAGGCACAATAGGTTATATGGCTCCTGAGTACGCAACAAGGGGTTATTTGACTGATAAAGTTGATGTTTATATCTTTAGAATTGTGGCCTTAGAAATTGTTAGTGGAAAAAGTAACACAAGTTACAGACCAAAAGAAGAGTCTGTTTACCTTCTTGATTGGGCTATTGTTCTACAAGAAGAAGGAAACTTACTCAAACTTGTTGATCCGAGTCTTGGGTTAGATTACTCAAAAGAAGAAGCCATGAGGATGATTTGTGTTGCTCTCGTATGCACGAACCAATCTTCGACTCTCAGACCATTCATGTCTTCCGTGGATGGATTAAACGATATTTTGCTGACTACAGAAGAAGTGAATGATCGACGTCTTTCTGAAAAGTAA 567 38.1 MKICLGIVKGLSYLHEESRLKIVHKDIKATNVLLDGSLNAQISDFGLAKLDEEENTHISTRIAGTIGYMAPEYATRGYLTDKVDVYIFRIVALEIVSGKSNTSYRPKEESVYLLDWAIVLQEEGNLLKLVDPSLGLDYSKEEAMRMICVALVCTNQSSTLRPFMSSVDGLNDILLTTEEVNDRRLSEK 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28740608 28742807 - Hsped.10g09000.1 Hepe10g0900 581447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0900 188 Gene3D Transferase(Phosphotransferase) domain 1 1 185 - -
Hepe10g0900 188 SUPERFAMILY Protein kinase-like (PK-like) 2 167 IPR011009 -
Hepe10g0900 188 Pfam Protein kinase domain 2 108 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g0900 188 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 1 172 - -
Hepe10g0900 188 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 167 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Hepe10g0900 188 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g0900 188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0900 Hepe-Chr10:28740608 Hepe01g1464 Hepe-Chr1:79952648 1.79e-69 dispersed
Hepe01g0555 Hepe-Chr1:65469028 Hepe10g0900 Hepe-Chr10:28740608 4.51e-44 wgd
Hepe10g0900 Hepe-Chr10:28740608 Hepe02g2147 Hepe-Chr2:58113966 3.64e-111 wgd
Hepe10g0900 Hepe-Chr10:28740608 Hepe06g0141 Hepe-Chr6:5131041 7.05e-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73176 PF00069 Pkinase 5.30E-21 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0900 - - - 0.0