Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g0914 | ATGCTCTCTCAGCTTCCTTCACAACATCCCTTGGTTTCATCTTCTAATAATCATGATCATGAAACCCTAGACCACCTTTTTTCTTCTGATCATTCTCATTCAAGCTCTCTCCTTTACAACCTCTCCATTTTGAAAGAAAAACTCCACCAAATCCAATCTGTCGTCAACATCGCCATCTACAGCCAACAAAACTCGACCGAAACTCTGTCCCCGCCCCCGCCCCCATCGTCTGTGGCGACTGGGGCCATCAACTCGTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAAATGAATAACCTCTCCGTAAACTCCTCCCTACGCAGCGATATCGTCGACAACGACCTCGACGGTCAACAACAACACCACCACCGTGAAGGTCTCGTTGACAACGACCACCGATCCACCACCCTTTTCGACATGGCCAGCGACAATCACAATTGGTACAACACAACAACTACTTATAACAACAACAATAACAACAACAACAGTAGAACAACAACGACGACGACAACAACACAGGATCATCGAATTTCGATCGATATTGTCGAGCTAGGCGCTTCGGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGAAAAGGGTTCAAGCGGGACGCGAACTTGAGAATGCACATGCGAGCGCACGGTGACGAGTATAAAGCGAGTGGGGCTTTGAGCAACCGAGAGAAGAGCCATGGACGGGACTCGAAGATCATAAGCAAGATAGGGACCAAATATTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAGCATGTCAAATTTCAGCCATTGAAATCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCATTGCCCCAAAATGTACGTCTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATCTGAGGACTCATGAGAAGCACTGTGGGGATGTAAAATGGCTGTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTCGATTTGTTCGTTGGGCACACCCCCGCGATCGGTTCGACAAAATTTTCGGGAAAGCTGGAAGAACATCAGTATGTTCATCCATTCTAG | 1104 | 46.47 | MLSQLPSQHPLVSSSNNHDHETLDHLFSSDHSHSSSLLYNLSILKEKLHQIQSVVNIAIYSQQNSTETLSPPPPPSSVATGAINSLIQELIMAASSMLFTCQQMNNLSVNSSLRSDIVDNDLDGQQQHHHREGLVDNDHRSTTLFDMASDNHNWYNTTTTYNNNNNNNNSRTTTTTTTTQDHRISIDIVELGASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNREKSHGRDSKIISKIGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVDLFVGHTPAIGSTKFSGKLEEHQYVHPF | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30748048 | 30749151 | + | Hsped.10g09140.1 | Hepe10g0914 | 581461 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g0914 | 367 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 204 | 224 | IPR013087 | - | |
Hepe10g0914 | 367 | SMART | c2h2final6 | 202 | 224 | IPR013087 | - | |
Hepe10g0914 | 367 | SMART | c2h2final6 | 255 | 288 | IPR013087 | - | |
Hepe10g0914 | 367 | SMART | c2h2final6 | 293 | 315 | IPR013087 | - | |
Hepe10g0914 | 367 | SUPERFAMILY | beta-beta-alpha zinc fingers | 200 | 227 | IPR036236 | - | |
Hepe10g0914 | 367 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 25 | 353 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
Hepe10g0914 | 367 | Gene3D | Classic Zinc Finger | 162 | 259 | - | - | |
Hepe10g0914 | 367 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Hepe10g0914 | 367 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Hepe10g0914 | 367 | Gene3D | Classic Zinc Finger | 291 | 341 | - | - | |
Hepe10g0914 | 367 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 202 | 229 | IPR013087 | - | |
Hepe10g0914 | 367 | Pfam | Zinc finger, C2H2 type | 202 | 224 | IPR013087 | - | |
Hepe10g0914 | 367 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
Hepe10g0914 | 367 | FunFam | Zinc finger protein 574 | 201 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g1432 | Hepe-Chr4:69976306 | Hepe10g0914 | Hepe-Chr10:30748048 | 1.25e-67 | dispersed | |
Hepe06g0068 | Hepe-Chr6:2059868 | Hepe10g0914 | Hepe-Chr10:30748048 | 1.88e-73 | dispersed | |
Hepe10g0914 | Hepe-Chr10:30748048 | HepeContig66g0218 | Hepe-ChrContig66:17594464 | 1.32e-223 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56495 | PF12874 | zf-met | 0.0035 | CL0361 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g0914 | - | - | - | 0.0 |