Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0914 ATGCTCTCTCAGCTTCCTTCACAACATCCCTTGGTTTCATCTTCTAATAATCATGATCATGAAACCCTAGACCACCTTTTTTCTTCTGATCATTCTCATTCAAGCTCTCTCCTTTACAACCTCTCCATTTTGAAAGAAAAACTCCACCAAATCCAATCTGTCGTCAACATCGCCATCTACAGCCAACAAAACTCGACCGAAACTCTGTCCCCGCCCCCGCCCCCATCGTCTGTGGCGACTGGGGCCATCAACTCGTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAAATGAATAACCTCTCCGTAAACTCCTCCCTACGCAGCGATATCGTCGACAACGACCTCGACGGTCAACAACAACACCACCACCGTGAAGGTCTCGTTGACAACGACCACCGATCCACCACCCTTTTCGACATGGCCAGCGACAATCACAATTGGTACAACACAACAACTACTTATAACAACAACAATAACAACAACAACAGTAGAACAACAACGACGACGACAACAACACAGGATCATCGAATTTCGATCGATATTGTCGAGCTAGGCGCTTCGGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGAAAAGGGTTCAAGCGGGACGCGAACTTGAGAATGCACATGCGAGCGCACGGTGACGAGTATAAAGCGAGTGGGGCTTTGAGCAACCGAGAGAAGAGCCATGGACGGGACTCGAAGATCATAAGCAAGATAGGGACCAAATATTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAGCATGTCAAATTTCAGCCATTGAAATCACTGATCTGTGTGAAGAATCACTACAAGAGAACTCATTGCCCCAAAATGTACGTCTGCAAGCTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATCTGAGGACTCATGAGAAGCACTGTGGGGATGTAAAATGGCTGTGTTCTTGTGGAACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTCGATTTGTTCGTTGGGCACACCCCCGCGATCGGTTCGACAAAATTTTCGGGAAAGCTGGAAGAACATCAGTATGTTCATCCATTCTAG 1104 46.47 MLSQLPSQHPLVSSSNNHDHETLDHLFSSDHSHSSSLLYNLSILKEKLHQIQSVVNIAIYSQQNSTETLSPPPPPSSVATGAINSLIQELIMAASSMLFTCQQMNNLSVNSSLRSDIVDNDLDGQQQHHHREGLVDNDHRSTTLFDMASDNHNWYNTTTTYNNNNNNNNSRTTTTTTTTQDHRISIDIVELGASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNREKSHGRDSKIISKIGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVDLFVGHTPAIGSTKFSGKLEEHQYVHPF 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30748048 30749151 + Hsped.10g09140.1 Hepe10g0914 581461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0914 367 ProSitePatterns Zinc finger C2H2 type domain signature. 204 224 IPR013087 -
Hepe10g0914 367 SMART c2h2final6 202 224 IPR013087 -
Hepe10g0914 367 SMART c2h2final6 255 288 IPR013087 -
Hepe10g0914 367 SMART c2h2final6 293 315 IPR013087 -
Hepe10g0914 367 SUPERFAMILY beta-beta-alpha zinc fingers 200 227 IPR036236 -
Hepe10g0914 367 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 353 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Hepe10g0914 367 Gene3D Classic Zinc Finger 162 259 - -
Hepe10g0914 367 MobiDBLite consensus disorder prediction 1 17 - -
Hepe10g0914 367 MobiDBLite consensus disorder prediction 1 27 - -
Hepe10g0914 367 Gene3D Classic Zinc Finger 291 341 - -
Hepe10g0914 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 229 IPR013087 -
Hepe10g0914 367 Pfam Zinc finger, C2H2 type 202 224 IPR013087 -
Hepe10g0914 367 MobiDBLite consensus disorder prediction 159 178 - -
Hepe10g0914 367 FunFam Zinc finger protein 574 201 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1432 Hepe-Chr4:69976306 Hepe10g0914 Hepe-Chr10:30748048 1.25e-67 dispersed
Hepe06g0068 Hepe-Chr6:2059868 Hepe10g0914 Hepe-Chr10:30748048 1.88e-73 dispersed
Hepe10g0914 Hepe-Chr10:30748048 HepeContig66g0218 Hepe-ChrContig66:17594464 1.32e-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56495 PF12874 zf-met 0.0035 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0914 - - - 0.0