Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0919 ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAATACAGGCATGTGGTGCTTCCTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGAGAGCGATTGGGGTTCAGCAGAGCCGAGGATGGGTGCATTATGCAATTCATCGACCAGAGCCACACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGATTCTGGCCAAGTGA 264 47.35 MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQILAK 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30869019 30869913 - Hsped.10g09190.1 Hepe10g0919 581466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0919 87 SUPERFAMILY Cell cycle regulatory proteins 1 81 IPR036858 GO:0016538(InterPro)
Hepe10g0919 87 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Hepe10g0919 87 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Hepe10g0919 87 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0936 Hepe-Chr8:8616904 Hepe10g0919 Hepe-Chr10:30869019 3.07e-57 transposed
Hepe10g0919 Hepe-Chr10:30869019 HepeContig66g0213 Hepe-ChrContig66:17520265 6.13e-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0919 K02219 - zma:100280869 159.073