Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0919 ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAATACAGGCATGTGGTGCTTCCTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGAGAGCGATTGGGGTTCAGCAGAGCCGAGGATGGGTGCATTATGCAATTCATCGACCAGAGCCACACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGATTCTGGCCAAGTGA 264 47.35 MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQILAK 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30869019 30869913 - Hsped.10g09190.1 Hepe10g0919 581466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0919 87 SUPERFAMILY Cell cycle regulatory proteins 1 81 IPR036858 GO:0016538(InterPro)
Hepe10g0919 87 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Hepe10g0919 87 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Hepe10g0919 87 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Hepe10g0919 87 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0919 K02219 - - zma:100280869 159.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0936 Hepe-Chr8:8616904 Hepe10g0919 Hepe-Chr10:30869019 3.07e-57 transposed
Hepe10g0919 Hepe-Chr10:30869019 HepeContig66g0213 Hepe-ChrContig66:17520265 6.13e-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1113 Blo03g01072 Blo03g01300 . Bda09g01433 . Bpe08g01297 Bma14g00435 . . Cmo13g00270 . Cma13g00263 . Car13g00200 Sed03g1855 . Cpe20g00722 Bhi08g00132 Tan08g1166 Cmetu12g1345 Lac10g2066 Hepe10g0919 . . Cla02g02112 Cam02g2241 Cec02g2278 Cco02g2320 Clacu02g2221 Cmu02g2156 Cre02g2473 Cone1ag0502 . Cone18ag0244 Cone11ag1331 . Csa06g01245 Chy11g00854 . . . . Bda09g00223 Bpe08g00184 . Bma07g00173 . Sed01g3063 Cmo02g01407 Cmo20g00563 Cma02g01373 . Car02g01152 Car20g00470 Cpe16g00498 . Bhi10g00128 Tan05g0193 Cmetu11g2372 . Hepe08g0936 . . . . . . . . . . Csa01g01406 Chy12g00760 Cme12g00492
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1084 . 1 294 Core Cell Cycle Gene Families AT3G48750 86.1 2.8e-151 531.6
Hepe04g0650 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.1 2.2e-95 345.9
Hepe01g2369 . 12 308 Core Cell Cycle Gene Families AT3G48750 53.7 3.1e-94 342.0
Hepe04g0650 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 8.2e-154 540.0
Hepe01g2369 . 12 310 Core Cell Cycle Gene Families AT3G54180 66.0 1.2e-117 419.9
Hepe01g1084 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 6.9e-92 334.3
Hepe04g0650 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.1 4.7e-123 437.6
Hepe01g2369 . 12 310 Core Cell Cycle Gene Families AT2G38620 57.9 1.0e-93 340.1
Hepe01g2369 . 8 308 Core Cell Cycle Gene Families AT1G76540 85.7 4.4e-155 544.3
Hepe04g0650 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.0 4.8e-117 417.9
Hepe01g1084 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 2.8e-93 339.0
Hepe01g2369 . 8 308 Core Cell Cycle Gene Families AT1G20930 87.0 4.3e-158 554.3
Hepe04g0650 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 7.9e-120 427.2
Hepe01g1084 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 2.1e-96 349.4
Hepe07g1446 . 77 596 Core Cell Cycle Gene Families AT5G10270 73.6 1.0e-214 743.0
Hepe08g0036 . 372 889 Core Cell Cycle Gene Families AT5G10270 72.8 1.2e-207 719.5
Hepe07g1035 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Hepe06g0383 . 140 456 Core Cell Cycle Gene Families AT5G10270 54.2 3.0e-97 352.8
Hepe09g1602 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 3.0e-97 352.8
Hepe01g0154 . 148 464 Core Cell Cycle Gene Families AT5G10270 52.4 8.9e-97 351.3
Hepe05g1484 . 103 419 Core Cell Cycle Gene Families AT5G10270 52.3 2.0e-96 350.1
Hepe07g2089 . 95 411 Core Cell Cycle Gene Families AT5G10270 52.9 2.2e-95 346.7
Hepe08g2381 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 8.3e-95 344.7
Hepe08g0545 . 143 459 Core Cell Cycle Gene Families AT5G10270 51.8 7.0e-94 341.7
Hepe07g2488 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.7 6.6e-92 335.1
Hepe10g0088 . 404 642 Core Cell Cycle Gene Families AT5G10270 53.5 2.1e-74 276.9
Hepe08g0036 . 436 888 Core Cell Cycle Gene Families AT5G64960 73.4 7.1e-178 620.5
Hepe07g1446 . 141 595 Core Cell Cycle Gene Families AT5G64960 70.9 1.8e-176 615.9
Hepe01g0154 . 202 464 Core Cell Cycle Gene Families AT5G64960 53.6 1.3e-81 300.8
Hepe07g1035 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Hepe06g0383 . 194 458 Core Cell Cycle Gene Families AT5G64960 54.6 2.8e-81 299.7
Hepe08g0544 . 176 440 Core Cell Cycle Gene Families AT5G64960 52.5 1.1e-80 297.7
Hepe09g1602 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 1.8e-80 297.0
Hepe07g2089 . 149 411 Core Cell Cycle Gene Families AT5G64960 52.9 4.0e-80 295.8
Hepe05g1484 . 157 419 Core Cell Cycle Gene Families AT5G64960 51.4 6.9e-80 295.0
Hepe08g0545 . 197 459 Core Cell Cycle Gene Families AT5G64960 52.5 2.6e-79 293.1
Hepe09g0370 . 8 432 Core Cell Cycle Gene Families AT1G73690 71.5 1.2e-168 589.7
Hepe09g0370 . 12 360 Core Cell Cycle Gene Families AT1G66750 72.9 1.5e-151 532.7
Hepe09g0370 . 8 433 Core Cell Cycle Gene Families AT1G18040 71.4 2.3e-169 592.0
Hepe04g0241 . 30 489 Core Cell Cycle Gene Families AT5G63610 77.3 3.3e-202 701.4
Hepe08g2602 . 1 478 Core Cell Cycle Gene Families AT4G28980 60.5 1.7e-166 582.8
Hepe02g2221 . 5 494 Core Cell Cycle Gene Families AT1G44110 59.7 2.4e-149 525.8
Hepe03g1583 . 226 492 Core Cell Cycle Gene Families AT1G44110 56.9 5.3e-88 322.0
Hepe01g2047 . 208 474 Core Cell Cycle Gene Families AT1G44110 56.2 4.9e-86 315.5
Hepe01g1808 . 204 483 Core Cell Cycle Gene Families AT1G44110 52.5 8.7e-83 304.7
Hepe03g1583 . 225 504 Core Cell Cycle Gene Families AT1G77390 51.6 4.7e-78 288.9
Hepe01g2047 . 208 474 Core Cell Cycle Gene Families AT1G77390 52.4 3.4e-76 282.7
Hepe01g1808 . 209 481 Core Cell Cycle Gene Families AT1G77390 52.0 1.9e-74 276.9
Hepe10g0294 . 170 427 Core Cell Cycle Gene Families AT1G77390 50.4 4.9e-67 252.3
Hepe01g2047 . 16 486 Core Cell Cycle Gene Families AT5G25380 52.8 3.6e-118 422.2
Hepe10g0294 . 9 443 Core Cell Cycle Gene Families AT5G25380 51.4 2.8e-102 369.4
Hepe03g1583 . 224 504 Core Cell Cycle Gene Families AT5G25380 63.7 2.9e-99 359.4
Hepe02g2221 . 199 487 Core Cell Cycle Gene Families AT5G25380 52.6 1.1e-82 304.3
Hepe01g1808 . 208 476 Core Cell Cycle Gene Families AT5G25380 52.4 4.9e-75 278.9
Hepe02g0630 . 116 340 Core Cell Cycle Gene Families AT5G25380 54.4 3.0e-64 243.0
Hepe01g2047 . 72 424 Core Cell Cycle Gene Families AT5G11300 54.7 2.9e-93 339.3
Hepe10g0294 . 58 381 Core Cell Cycle Gene Families AT5G11300 54.8 3.0e-82 302.8
Hepe02g2221 . 213 432 Core Cell Cycle Gene Families AT5G11300 56.4 4.2e-68 255.8
Hepe01g1808 . 204 420 Core Cell Cycle Gene Families AT5G11300 55.8 3.4e-62 236.1
Hepe08g1310 . 92 314 Core Cell Cycle Gene Families AT5G11300 51.1 8.4e-61 231.5
Hepe08g1309 . 208 429 Core Cell Cycle Gene Families AT5G11300 50.9 3.2e-60 229.6
Hepe02g0630 . 116 282 Core Cell Cycle Gene Families AT5G11300 54.8 8.1e-48 188.3
Hepe03g1583 . 158 504 Core Cell Cycle Gene Families AT1G15570 61.2 2.1e-118 422.9
Hepe02g2221 . 214 491 Core Cell Cycle Gene Families AT1G15570 53.6 5.1e-80 295.4
Hepe03g1583 . 4 504 Core Cell Cycle Gene Families AT1G80370 50.1 7.5e-119 424.5
Hepe01g2047 . 17 486 Core Cell Cycle Gene Families AT1G80370 51.2 4.6e-108 388.7
Hepe02g2221 . 214 479 Core Cell Cycle Gene Families AT1G80370 56.8 2.8e-81 299.7
Hepe01g1808 . 204 481 Core Cell Cycle Gene Families AT1G80370 52.9 2.9e-78 289.7
Hepe08g1309 . 208 486 Core Cell Cycle Gene Families AT1G80370 50.9 2.8e-73 273.1
Hepe08g1310 . 92 370 Core Cell Cycle Gene Families AT1G80370 50.9 1.4e-72 270.8
Hepe08g1309 . 119 488 Core Cell Cycle Gene Families AT5G43080 56.1 4.0e-112 401.7
Hepe01g1808 . 115 486 Core Cell Cycle Gene Families AT5G43080 55.2 2.8e-110 395.6
Hepe08g1310 . 3 372 Core Cell Cycle Gene Families AT5G43080 56.1 4.9e-110 394.8
Hepe08g1314 . 3 369 Core Cell Cycle Gene Families AT5G43080 54.4 3.3e-106 382.1
Hepe02g2221 . 215 494 Core Cell Cycle Gene Families AT5G43080 52.1 3.1e-80 295.8
Hepe01g2047 . 210 476 Core Cell Cycle Gene Families AT5G43080 52.8 4.6e-76 282.0
Hepe03g1583 . 227 497 Core Cell Cycle Gene Families AT5G43080 52.0 2.3e-75 279.6
Hepe10g0294 . 167 445 Core Cell Cycle Gene Families AT5G43080 50.7 1.9e-74 276.6
Hepe08g1310 . 1 372 Core Cell Cycle Gene Families AT1G47210 58.4 6.5e-121 431.0
Hepe08g1309 . 117 488 Core Cell Cycle Gene Families AT1G47210 57.6 8.5e-121 430.6
Hepe08g1314 . 1 369 Core Cell Cycle Gene Families AT1G47210 56.8 1.5e-117 419.9
Hepe01g1808 . 114 486 Core Cell Cycle Gene Families AT1G47210 54.3 9.4e-112 400.6
Hepe03g1583 . 227 504 Core Cell Cycle Gene Families AT1G47210 51.1 2.2e-76 283.1
Hepe01g2047 . 210 476 Core Cell Cycle Gene Families AT1G47210 50.9 4.6e-74 275.4
Hepe10g0294 . 167 433 Core Cell Cycle Gene Families AT1G47210 50.9 9.5e-72 267.7
Hepe01g1808 . 204 484 Core Cell Cycle Gene Families AT1G47220 57.7 2.5e-92 335.9
Hepe08g1310 . 92 372 Core Cell Cycle Gene Families AT1G47220 58.7 3.3e-92 335.5
Hepe08g1309 . 180 488 Core Cell Cycle Gene Families AT1G47220 53.4 2.8e-91 332.4
Hepe08g1314 . 92 369 Core Cell Cycle Gene Families AT1G47220 57.7 1.3e-88 323.6
Hepe10g0294 . 167 433 Core Cell Cycle Gene Families AT1G47220 50.6 5.6e-68 255.0
Hepe01g1808 . 114 486 Core Cell Cycle Gene Families AT1G47230 56.4 1.4e-115 413.3
Hepe08g1309 . 117 488 Core Cell Cycle Gene Families AT1G47230 56.6 2.4e-115 412.5
Hepe08g1310 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.0 5.9e-114 407.9
Hepe08g1314 . 1 369 Core Cell Cycle Gene Families AT1G47230 55.2 1.5e-109 393.3
Hepe02g2221 . 216 496 Core Cell Cycle Gene Families AT1G47230 51.4 5.2e-78 288.5
Hepe03g1583 . 229 504 Core Cell Cycle Gene Families AT1G47230 50.9 2.3e-73 273.1
Hepe04g0519 . 1 447 Core Cell Cycle Gene Families AT4G37490 54.5 1.5e-113 406.8
Hepe04g0519 . 1 344 Core Cell Cycle Gene Families AT5G06150 54.5 1.7e-83 306.6
Hepe04g0519 . 1 404 Core Cell Cycle Gene Families AT3G11520 56.1 8.0e-106 380.9
Hepe08g0180 . 722 1063 Core Cell Cycle Gene Families AT3G11520 51.6 2.9e-84 309.3
Hepe04g1666 . 174 399 Core Cell Cycle Gene Families AT3G11520 51.8 1.7e-60 230.3
Hepe08g0180 . 708 1102 Core Cell Cycle Gene Families AT2G26760 52.4 1.2e-104 377.1
Hepe04g1666 . 29 442 Core Cell Cycle Gene Families AT2G17620 60.1 5.9e-126 448.0
Hepe01g2338 . 37 441 Core Cell Cycle Gene Families AT2G17620 52.7 2.0e-105 379.8
Hepe04g1666 . 29 399 Core Cell Cycle Gene Families AT4G35620 56.6 1.7e-100 363.2
Hepe01g2338 . 37 396 Core Cell Cycle Gene Families AT4G35620 51.6 1.7e-84 310.1
Hepe08g0180 . 838 1063 Core Cell Cycle Gene Families AT4G35620 51.1 3.1e-54 209.5
Hepe01g2338 . 1 439 Core Cell Cycle Gene Families AT1G20610 62.7 4.5e-142 501.5
Hepe04g1666 . 1 442 Core Cell Cycle Gene Families AT1G20610 54.0 1.6e-118 423.3
Hepe01g2338 . 1 336 Core Cell Cycle Gene Families AT1G76310 63.4 4.6e-105 378.3
Hepe04g1666 . 1 339 Core Cell Cycle Gene Families AT1G76310 52.0 7.3e-79 291.2
Hepe04g0519 . 175 340 Core Cell Cycle Gene Families AT1G76310 52.9 1.3e-40 164.1
Hepe08g0180 . 836 1004 Core Cell Cycle Gene Families AT1G76310 52.6 1.3e-40 164.1
Hepe08g1610 . 1 329 Core Cell Cycle Gene Families AT1G70210 63.5 2.0e-108 389.4
Hepe10g1669 . 1 305 Core Cell Cycle Gene Families AT1G70210 63.9 9.8e-100 360.5
Hepe07g0403 . 35 233 Core Cell Cycle Gene Families AT1G70210 51.0 2.5e-50 196.4
Hepe04g1407 . 41 312 Core Cell Cycle Gene Families AT2G22490 56.1 1.5e-82 303.5
Hepe07g0449 . 1 346 Core Cell Cycle Gene Families AT4G34160 53.7 5.3e-78 288.5
Hepe04g1407 . 34 258 Core Cell Cycle Gene Families AT5G65420 57.2 1.0e-67 253.8
Hepe10g0446 . 70 270 Core Cell Cycle Gene Families AT5G65420 55.0 7.2e-61 231.1
Hepe04g1407 . 39 216 Core Cell Cycle Gene Families AT5G10440 57.5 2.3e-52 202.6
Hepe10g0446 . 65 244 Core Cell Cycle Gene Families AT5G10440 52.2 7.3e-51 197.6
Hepe04g1212 . 1 277 Core Cell Cycle Gene Families AT5G27620 65.7 2.4e-102 369.0
Hepe10g0919 . 1 87 Core Cell Cycle Gene Families AT2G27960 93.1 1.2e-44 175.6
Hepe08g0936 . 1 86 Core Cell Cycle Gene Families AT2G27960 89.5 2.4e-42 167.9
Hepe10g0919 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Hepe08g0936 . 1 76 Core Cell Cycle Gene Families AT2G27970 90.8 9.1e-39 156.0
Hepe01g0961 . 24 1010 Core Cell Cycle Gene Families AT3G12280 74.3 0.0e+00 1420.2
Hepe01g0960 . 5 1022 Core Cell Cycle Gene Families AT3G12280 72.3 0.0e+00 1410.2
Hepe03g1916 . 2 489 Core Cell Cycle Gene Families AT1G02970 60.0 4.3e-160 561.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002221 3 2 1 3 2 2 3 2 2 2 2 2 1 2 2 3 2 3 3 2 1 2 2 0 2 0 2 3 3 1 60