Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g0930 ATGGCGCTCTCTCCATCCCTACAACTCATCCGATTTCATCCTCAAGCACTCTCCACATCCTCTCCCCATCTTCTCTTCTTCCGATCTCCATGGCTTTCCTCTTTCGCTCCGTCTCCGAACTGCAGGATCAAGTTATCTTCAAGGACGACGTGTTTCTCCATGTCCACCGAGGAGGACCAGTGGAGTGAATCAGAACCGTTGGGGGGAGATCGTCAGGATGATATTATTGGCGTTCACCAAGAGAGCTCTGTCGTCACTTCTGCTTCTGCTTCTGCGCAGAGGATTTCTCCCTCCTCATCGTCTCCGAGTGATTATCTCTCGCTTGCGATTCGAGAGACGGTTTATGAGGTGTTAGAGGTTAAGGCCGATGGAACTGTATCCACTAGGAAGATTAACAGACGCCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATCCCTACATTACTGGTCCGTGAACATGCTCTTTTGCTTAATCTGGGTTCGCTACGAGCAATAGCTATGAAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACACAACGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACTTTGGTTGAATTAGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATACGTCGTATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAATGCTCTCTTCCTGTGGATAAGCAGATTGCTGAAGAAGAGGAAGAAGAAATAGAAATGCTGCTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGCCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTCAATTTGAGCTCGCGACGACTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGCTTGCCTTCTGGTTAACAACCGCTGGGATAATTGTTGGCGGTGTTGTGGCATTCTTTCTCATGTATTCGTATCTCAGAGTTAGGAGAATCCTATAG 1335 45.32 MALSPSLQLIRFHPQALSTSSPHLLFFRSPWLSSFAPSPNCRIKLSSRTTCFSMSTEEDQWSESEPLGGDRQDDIIGVHQESSVVTSASASAQRISPSSSSPSDYLSLAIRETVYEVLEVKADGTVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSIPTLLVREHALLLNLGSLRAIAMKDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPVDKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVLAFWLTTAGIIVGGVVAFFLMYSYLRVRRIL 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31532282 31546932 + Hsped.10g09300.1 Hepe10g0930 581477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g0930 444 Coils Coil 324 344 - -
Hepe10g0930 444 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 98 443 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Hepe10g0930 444 Pfam Magnesium transporter MRS2-like 120 374 - -
Hepe10g0930 444 CDD Mrs2_Mfm1p-like 117 443 IPR039204 -
Hepe10g0930 444 Gene3D Magnesium transport protein CorA, transmembrane region 194 375 - -
Hepe10g0930 444 FunFam Magnesium transporter MRS2-11, chloroplastic 193 375 - -
Hepe10g0930 444 Gene3D - 107 191 - -
Hepe10g0930 444 FunFam Magnesium transporter MRS2-11, chloroplastic 110 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g0930 K16075 - - csv:101219314 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0930 Hepe-Chr10:31532282 HepeContig66g0203 Hepe-ChrContig66:16858645 2.66e-269 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1289 . 1 447 MRS2 Gene Family AT1G16010 85.0 5.4e-207 717.2
Hepe10g0575 . 6 380 MRS2 Gene Family AT1G16010 52.4 4.4e-108 388.7
Hepe06g1965 . 29 330 MRS2 Gene Family AT1G16010 50.9 8.9e-77 284.6
Hepe03g0248 . 1 367 MRS2 Gene Family AT5G64560 81.8 5.9e-162 567.4
Hepe06g1965 . 1 331 MRS2 Gene Family AT5G64560 67.5 2.1e-111 399.4
Hepe02g0661 . 21 493 MRS2 Gene Family AT3G19640 62.5 2.0e-146 516.2
Hepe07g0517 . 58 405 MRS2 Gene Family AT3G58970 69.2 2.6e-121 432.6
Hepe10g0575 . 3 380 MRS2 Gene Family AT2G03620 68.1 4.3e-137 485.0
Hepe02g1289 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.3e-113 405.2
Hepe03g0248 . 1 329 MRS2 Gene Family AT5G09690 75.6 1.2e-128 456.4
Hepe06g1965 . 1 330 MRS2 Gene Family AT5G09690 64.3 2.3e-106 382.5
Hepe02g1289 . 40 383 MRS2 Gene Family AT5G09690 50.6 1.5e-78 290.0
Hepe03g0248 . 12 289 MRS2 Gene Family AT5G09720 67.0 5.0e-92 334.7
Hepe06g1965 . 35 293 MRS2 Gene Family AT5G09720 58.6 5.2e-73 271.6
Hepe02g1289 . 1 447 MRS2 Gene Family AT1G80900 83.2 9.9e-201 696.4
Hepe10g0575 . 6 380 MRS2 Gene Family AT1G80900 54.0 1.4e-106 383.6
Hepe06g1965 . 29 330 MRS2 Gene Family AT1G80900 50.5 1.0e-72 271.2
Hepe10g0930 . 104 443 MRS2 Gene Family AT5G22830 83.5 8.2e-158 553.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41