Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1017 ATGTTAGAGTTTGGGTACTCAGTTTGCCATTTATTTGTGTTGAATTGGAAACAATCTTTCAGCTTTTCAGGTGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCGTTGCGGGAAATCCAACTCGCTACCGATAACTTCAATGAAACGAACATCATTGGGCAAGGAGGGTTTGGAAAAGTAGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTTCGGTTGATAGGATTCTACACAACCACAACAGAGAGAATACTTGTTTATCCATTCCTGCAGAATCTTAGCGTGGCGCGTCGCTTGAGAGCAAATGGTTCGGAGTACTTGCACGAGCATTGTAATCCTAAGATCATTCATCGAGATCTCAAGGCTGCAAATATCTTATTAGACGATGAGTTTGAAGTTGTTCTTGGAGATTTTGGGCTGGCCAAGCTAGTTGATACTAAATTGACTCATATTACCACTCAAGTGCGTGGTACAATGGGCCACATTGCCCCAGAATACTTGTCCACAGGAAAATCCTCCGAAAAGACAGATGTTTTTGGATATGGTATAACCCTTCTTGAACTTGTCACCGGTGAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAAAGGGAGAATAGGCTTGAAGATGTTGTGGACCAAAACTTGAAGAGCTACGACCCGAAAGAAGTGGAAAACATAGTTCAGGTGGCATTGCTTTGCACTCAAACTTCATCGGAGGAGCGGCCGACAATGGCGGAAGTTGTGAATCTACTACATGGAGAACGGCTGGCAGATAGGTGGGCAGATTGGATGCAGCTTGAAGAAGAGGTACGAGATCAGGAAGTGTTCCTTTTGTGTCACCAATTTGTTTGGGGTGAAGAGTCAAGCCATGATCAAGAAGCCATACAATTGTCTAAAGCCAGATAG 1026 43.37 MLEFGYSVCHLFVLNWKQSFSFSGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFYTTTTERILVYPFLQNLSVARRLRANGSEYLHEHCNPKIIHRDLKAANILLDDEFEVVLGDFGLAKLVDTKLTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGERAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDQNLKSYDPKEVENIVQVALLCTQTSSEERPTMAEVVNLLHGERLADRWADWMQLEEEVRDQEVFLLCHQFVWGEESSHDQEAIQLSKAR 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 40366415 40368185 + Hsped.10g10170.1 Hepe10g1017 581564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1017 341 SMART serkin_6 50 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1017 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe10g1017 341 Gene3D Phosphorylase Kinase; domain 1 20 114 - -
Hepe10g1017 341 Pfam Protein tyrosine and serine/threonine kinase 62 128 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe10g1017 341 SUPERFAMILY Protein kinase-like (PK-like) 30 291 IPR011009 -
Hepe10g1017 341 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 339 - -
Hepe10g1017 341 FunFam Somatic embryogenesis receptor-like kinase 1 109 311 - -
Hepe10g1017 341 Pfam Protein kinase domain 129 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1017 341 ProSiteProfiles Protein kinase domain profile. 50 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1017 341 Gene3D Transferase(Phosphotransferase) domain 1 115 311 - -
Hepe10g1017 341 FunFam Somatic embryogenesis receptor kinase 1 19 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0030 Hepe-Chr10:283159 Hepe10g1017 Hepe-Chr10:40366415 2.26e-103 dispersed
Hepe10g1017 Hepe-Chr10:40366415 Hepe09g0761 Hepe-Chr9:7360508 1.85e-62 dispersed
Hepe08g1197 Hepe-Chr8:12341898 Hepe10g1017 Hepe-Chr10:40366415 1.90e-210 transposed
Hepe01g0118 Hepe-Chr1:14645663 Hepe10g1017 Hepe-Chr10:40366415 9.74e-10 wgd
Hepe10g1017 Hepe-Chr10:40366415 Hepe03g0872 Hepe-Chr3:30403257 8.84e-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73177 PF00069 Pkinase 1.20E-29 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1017 - - - 0.0