Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1049 ATGTCTAATAGTAATGTTGAGGGTTCCCCAGGAACCTCAACGCATGGAGTGACTGATAAAACTGTTAAGTTCGATTTACCAGTTGACAGTGAGCATAAGGCCACGGTTTTCAAGCTCTTCTCCTTCGCCAACCCCCACATGAGAACCTTTCACCTTTCTTGGATCTCCTTCTTCACCTGCTTCGTTTCCACCTTCGCCGCCGCCCCTCTCGTCCCCATCATCCGCGACAACCTCAACCTCACCAAAGTCGACATTGGCAACGCTGGAGTCACCTCCGTCTCCGGTAGTATTTTCTCTCGTCTCGTCATGGGCGCCGTTTGCGACCTCTTGGGCCCTCGCTATGGCTGTGCCTTTTTGATTATGCTCGCCGCTCCCACCGTGTTTTGCATGTCCTTTGTTTCGTCCGCTGGCGGTTACATAGCGGTTAGATTCATGATTGGATTCTCGCTCGCTACGTTCGTGTCGTGCCAGTACTGGATGAGCACCATGTTCAACAGTAAGATCATTGGGCTTGTGAATGGGACTGCTGCTGGTTGGGGGAATATGGGGGGAGGAGCCACTCAGCTCATTATGCCTTTGTTGTATGATATTATTAAGAGGGCTGGTGCTACTCCTTTCACTGCTTGGAGGATTGCCTTCTTCATCCCTGGTTGGCTTCATATTATTATGGGCATCTTAGTTATGACTCTTGGCCAAGATCTTCCTGATGGCAATCTCGGAAGCCTTCAGAAGCAGGGTAATGTTGCAAAAGATAAATTCTCCAAAGTGCTATGGTATGCTGTCACCAATTATAGAACTTGGATCTTTGTCCTCCTCTACGGCTACTCCATGGGGGTTGAACTTTCCACCGATAACGTCGTTGCTGAATATTTCTACGACAGGTTTGATCTAAAGCTGCACACGGCCGGAATTATCGCAGCAACATTCGGCATGGCGAATCTAGTGGCTCGACCCTTCGGAGGGTACGCCTCGGACCTTGCAGCTCGCTATTTCGGGATGAGAGGAAGGCTATGGACCCTATGGATCCTCCAAACATGCGGGGGATGTTTTTGCATGTGGCTAGGGAAAGCAAACAAGCTTCCAACAGCCATAGCAGCAATGATTCTGTTCTCAATAGGAGCTCAGGCAGCATGTGGAGCCACATTTGGAATCGTTCCATTCATTTCGAGGAGGTCATTAGGGATAGTATCAGGATTAACAGGCGCAGGAGGGAATTTTGGATCTGGTTTAACTCAATTAGTGTTCTTCTCAACAACAAAATACACAACAGACAAAGGGTTGTTCTTGATGGGAGTAATGATAGTATGTTGCACTTTACCAGTCACTTTGGTTCATTTCCCTCAATGGGGAAGCATGTTCTTACCACCAACTAAACACGCTGAGAAATCTGCTGAAGAATTCTACTATGGAGCTGAATGGAGTGAGGATGAAAAGTTGAAAAATTTGCACCATCAAAGCCTCATGTTTGCTAAGAACAGCAGATCTGAACGTGGGAGGCGTGTGGCCTCAGCTCAAACTCCACCAAATACCACTCCTTCTCATGCTTGA 1548 47.93 MSNSNVEGSPGTSTHGVTDKTVKFDLPVDSEHKATVFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLAAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGWLHIIMGILVMTLGQDLPDGNLGSLQKQGNVAKDKFSKVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVVAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDLAARYFGMRGRLWTLWILQTCGGCFCMWLGKANKLPTAIAAMILFSIGAQAACGATFGIVPFISRRSLGIVSGLTGAGGNFGSGLTQLVFFSTTKYTTDKGLFLMGVMIVCCTLPVTLVHFPQWGSMFLPPTKHAEKSAEEFYYGAEWSEDEKLKNLHHQSLMFAKNSRSERGRRVASAQTPPNTTPSHA 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 41855984 41857773 + Hsped.10g10490.1 Hepe10g1049 581596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1049 515 FunFam High affinity nitrate transporter 42 239 - -
Hepe10g1049 515 Pfam Major Facilitator Superfamily 54 410 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Hepe10g1049 515 Gene3D MFS general substrate transporter like domains 42 238 IPR036259 -
Hepe10g1049 515 MobiDBLite consensus disorder prediction 490 515 - -
Hepe10g1049 515 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 9 500 IPR044772 GO:0005886(PANTHER)|GO:0015112(InterPro)|GO:0015112(PANTHER)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Hepe10g1049 515 CDD MFS_NRT2_like 50 443 IPR044772 GO:0015112(InterPro)
Hepe10g1049 515 Gene3D MFS general substrate transporter like domains 249 451 IPR036259 -
Hepe10g1049 515 FunFam Nitrate transporter 2.1 250 451 - -
Hepe10g1049 515 SUPERFAMILY MFS general substrate transporter 44 447 IPR036259 -
Hepe10g1049 515 MobiDBLite consensus disorder prediction 499 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1049 Hepe-Chr10:41855984 Hepe10g1619 Hepe-Chr10:52905987 2.25e-213 dispersed
Hepe10g1048 Hepe-Chr10:41809252 Hepe10g1049 Hepe-Chr10:41855984 0.0 tandem
Hepe10g1049 Hepe-Chr10:41855984 Hepe10g1050 Hepe-Chr10:41904789 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1049 K02575 - csv:101218244 947.577