Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1107 ATGATGTCTGAATTTGATGGGCTTTCTGGTCTGTCCACAATCAGTAATCTGATTGGTCAACAGCAGCCTAATTTCAACCCTAATCCAGTTCTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCAGAAGTAATAGCGATGTCTCCAAAGTCTCTAATGACGAAGAACAGATTCCTTTGCGAGATATGCAACAAGGGATTCCAAAGAGACCAGAACTTGCAGCTCCATCGGCGAGGGCACAACCTGCCATGGAAGCTTAAACAAAGGACGAGCAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGCTGCGTTCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGAATCAAGAAGCACTTCAGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAAAAGTATGCAGTTCAGTCGGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGAACTCTCTTCTCCAGGAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAGAATTCAAGAATCATCCCAGTTTCAACTATAAATCATTCAACCTTCATAAACAATAATCCCACCACAATAATCACCCACCACTTTTCTCCTCCTTCTCCTTCACTACTATTCCAACCCAACTTCTCCGCCACCGCCGCCGATCCGACCTCCCTCGTCCACAACTTCCCCAACATCGACCACGGTGGCGACATCAAGCCCCGTCCACCGCCACCGTCGTCGCCGCAGCTCCCGCTCTGGCTCGACCCTCTACCAAGTCCCAACAACTTCTTCTCCGACCACTCCCAATTCTTGTCGGAGAACCACCACCCTTTCTTGTCGGAGCCGTTGACGACGACCTCCTCGTACGCAGCCATGGCGCCCCACATGTCCGCTACTGCTCTCCTCCAGAAAGCCGCCCAAATGGGGCCCACCGGAACCCTCGCCACGCCGCCAATTTTCTTCAGCTCCAGCGCCGCCACGGCCGCGGCGGCTGCGTATGGAATGGACATCTCCGCGGCCGTGTTATCGGATGGGCGTCCGATGATGAAGGCATTAATGGGCGGAGCAAAGGAAGAAATTGGAGGGCAGAATTTGACGAGAGACTTTCTCGGCGTCGGAAATCAGGTGGTGCATCTGATGCCGGTGGGATCCAATCAGTACAGTGATCAGAGCCGCCGCCATTAG 1245 52.45 MMSEFDGLSGLSTISNLIGQQQPNFNPNPVLVPLKKKRNLPGTPDPDAEVIAMSPKSLMTKNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRIIPVSTINHSTFINNNPTTIITHHFSPPSPSLLFQPNFSATAADPTSLVHNFPNIDHGGDIKPRPPPPSSPQLPLWLDPLPSPNNFFSDHSQFLSENHHPFLSEPLTTTSSYAAMAPHMSATALLQKAAQMGPTGTLATPPIFFSSSAATAAAAAYGMDISAAVLSDGRPMMKALMGGAKEEIGGQNLTRDFLGVGNQVVHLMPVGSNQYSDQSRRH 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 43772864 43776843 + Hsped.10g11070.1 Hepe10g1107 581654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1107 414 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 202 - -
Hepe10g1107 414 SMART c2h2final6 105 135 IPR013087 -
Hepe10g1107 414 SMART c2h2final6 64 86 IPR013087 -
Hepe10g1107 414 SMART c2h2final6 140 160 IPR013087 -
Hepe10g1107 414 Gene3D Classic Zinc Finger 118 197 - -
Hepe10g1107 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 398 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe10g1107 414 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Hepe10g1107 414 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Hepe10g1107 414 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Hepe10g1107 414 FunFam protein indeterminate-domain 12-like 43 111 - -
Hepe10g1107 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Hepe10g1107 414 Gene3D Classic Zinc Finger 43 116 - -
Hepe10g1107 414 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Hepe10g1107 414 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1503 Hepe-Chr2:19588767 Hepe10g1107 Hepe-Chr10:43772864 9.93e-108 dispersed
Hepe04g0920 Hepe-Chr4:63494671 Hepe10g1107 Hepe-Chr10:43772864 1.21e-105 dispersed
Hepe04g1493 Hepe-Chr4:70556596 Hepe10g1107 Hepe-Chr10:43772864 1.61e-101 dispersed
Hepe08g0425 Hepe-Chr8:3743018 Hepe10g1107 Hepe-Chr10:43772864 8.26e-104 dispersed
Hepe09g1585 Hepe-Chr9:43517231 Hepe10g1107 Hepe-Chr10:43772864 6.20e-106 dispersed
Hepe10g0659 Hepe-Chr10:8737679 Hepe10g1107 Hepe-Chr10:43772864 2.02e-98 dispersed
Hepe10g0981 Hepe-Chr10:36769382 Hepe10g1107 Hepe-Chr10:43772864 6.06e-20 dispersed
Hepe10g1107 Hepe-Chr10:43772864 HepeContig66g0154 Hepe-ChrContig66:13039420 2.30e-18 dispersed
Hepe10g1107 Hepe-Chr10:43772864 Hepe05g0251 Hepe-Chr5:2990693 4.24e-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56504 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1107 K25870 - csv:101212420 556.599