Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1221 ATGGATTTCTCTTCTGTTCCAGTCTATTTAGATCCTCCTCCCAATTGGCATCTGCAATCAAATCATCACCATCATCAAATAAGCAATAATGGATCTCCTCAGCAGCAGCAGTTTCTCTCACTGCCAACTCAACAACAACTACCATCTGCATCGCTGCCGCCGCCTCATGTCGGTGGCGGTGGAGTTGGATCGATCCGGCGGGGTTCGATGGCGGACCGAGCTCGGATGGCCAACGTACCGCAACCGGAGACGGCACTCAAGTGTCCTCGATGTGATTCTTCCAACACGAAGTTTTGTTACTTTAATAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGTCGATACTGGACTCGCGGTGGCGCCCTTCGCAGCGTCCCGGTCGGGGGCGGTTGTCGTCGGAATAAGAAGAACAAAACTAGTAGACGCTCGAAGTCTCCGGCGGCCAGGAATGAAACTCAGGCGCTGAATAACAATAACAATTCAAACTCACCCACCACTACAATTCCCTTGCACAGCAGTGCTGAGAATATCATTGGTCATTTACAGCCTCAACATCCCCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGTCGGGGAATTTAGGGTTGAACTTCAACGAGATCCCGGCTCAACCGGGGGATATCGGGAACGGCAGCCTTCTGAATCATCCGTGGCGCAATTCCCAGAACTTTCCTCTCTCCGGTGGCCTAGAAACTCCGGCGGGGTTGTACCCGTTTCAAATTGGCGAAGGCGGAAACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCAATTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAATTTGGGTCTTAACAATTCGGATAACAATCAATTTTGGAGCAATGGAAATGTTTGGACAGATCTATCAGCTATCAGTTCTTCTTCAAGTGGCCATATTTCTTGCGACTTCAATCATTAA 1002 48.4 MDFSSVPVYLDPPPNWHLQSNHHHHQISNNGSPQQQQFLSLPTQQQLPSASLPPPHVGGGGVGSIRRGSMADRARMANVPQPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKNKTSRRSKSPAARNETQALNNNNNSNSPTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGSGNLGLNFNEIPAQPGDIGNGSLLNHPWRNSQNFPLSGGLETPAGLYPFQIGEGGNNTTNSILTPNSRATQLPPVKIEETQVLNLLKSSNLGLNNSDNNQFWSNGNVWTDLSAISSSSSGHISCDFNH 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47279715 47281674 - Hsped.10g12210.1 Hepe10g1221 581768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1221 333 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe10g1221 333 MobiDBLite consensus disorder prediction 19 51 - -
Hepe10g1221 333 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe10g1221 333 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe10g1221 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 197 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1221 333 MobiDBLite consensus disorder prediction 130 174 - -
Hepe10g1221 333 MobiDBLite consensus disorder prediction 150 174 - -
Hepe10g1221 333 MobiDBLite consensus disorder prediction 14 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0799 Hepe-Chr1:71828666 Hepe10g1221 Hepe-Chr10:47279715 5.75e-52 dispersed
Hepe10g1082 Hepe-Chr10:43073319 Hepe10g1221 Hepe-Chr10:47279715 3.70e-33 dispersed
Hepe10g1221 Hepe-Chr10:47279715 Hepe10g1750 Hepe-Chr10:54309016 3.10e-22 dispersed
Hepe10g1221 Hepe-Chr10:47279715 Hepe02g2037 Hepe-Chr2:48306048 6.53e-23 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe04g0864 Hepe-Chr4:62891157 2.94e-44 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe05g0180 Hepe-Chr5:2229298 2.48e-57 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe08g0855 Hepe-Chr8:7793042 8.51e-34 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe08g0797 Hepe-Chr8:7152359 8.04e-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56510 PF02701 zf-Dof 7.40E-32 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1221 - - - 0.0