Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1222 ATGGATGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAGCGAGATTGCTTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTCTCATCCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGATACTCCCTGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGATTCGGCTAAGAAGTTGCTCAGATTTGGAAGCGATGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTGAAGAGGTAACGGCTCGGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGACGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGTCGATGCACCTGACTCCGAGCTGTTGGATGATATCTTTGCTCTTTACAACACAAACAATGATTCTTCTGTAGATCAAGATTGCCTAAGGAGACTTTCTGAAAAATTACAGTTATTTGGAATATCCGACCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTAGTGGAGGAGATCCAGGTGAGAGCATTGAGAAGATGGCAGGGATGCTGAAGAAAATAAAACATTTTGTGCAAACGGAGAACCTCGAAACGGACACTCCTGGTAGAGAAAAGACTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGAGAAAAATAATAAGGCCCCAATTATACCAGATGATTTTCGATGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTTTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAATGGCTTGAAGCAGGGCATGGGACGTGTCCGAAGACACAACAGAACCTTTCAAGCTCTACTCTTACCCCAAATTATGTGTTGCGTAGTCTTATAGCCCAGTGGTGTGAGGCTAATGGTATCGAACCACCAAAACGACCAAGCAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCCCCCGCTGAACGCACCAAGATTGATATTTTGCTTTGCAAGCTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAAATCCGACTTCTTGCGAAGCGGAACGCAGATAATCGCGTTGCCATTGCTGAGGCTGGTGCGATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTCAAGAAGGGGAGCATGGAAGCGCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAAAATAAAATTAGAATTGGTGCCTCTGGAGCTATCCCGCCGCTTGTTACGCTGCTTAGCGAAGGCACTCAAAGGGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTAAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTCGCTAGCCATCCGGAAGGGAAAGCTGCCATTGGATCTGCAAAAGCAGTGCCGGTTTTGGTAAATGTTATTGGCACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCTGTTCTCGTGCATCTCTGCTCCGGAGACGAAAAACACCTAGTAGAGGCCAGGGATCTCGGAGTAATTAGCCCATTGTTAGATTTGGCAAACAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGATTGAGCGAATGAACCGACTCTTCGAGCACGCAGTGCAACTAGAGGAGATTCGGGTGCAATCGCCGGAGTCTCAACCTCTAAACCAGCCATCACAATCAACTTCTGCAACAGAAGTTGTCGGTAGCTGA 2004 47.06 MDEDNGALIQSLIDVVSEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDSKEILPEDTLKALVLLKEALDSAKKLLRFGSDGSKIFLAVEREQIMNKFEEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRVDAPDSELLDDIFALYNTNNDSSVDQDCLRRLSEKLQLFGISDLTQESIALHEMVTASGGDPGESIEKMAGMLKKIKHFVQTENLETDTPGREKTPPASCSGQVSNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSSTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKIRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVNVIGTGSPRNRENAAAVLVHLCSGDEKHLVEARDLGVISPLLDLANNGTDRGKRKAAQLIERMNRLFEHAVQLEEIRVQSPESQPLNQPSQSTSATEVVGS 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47330852 47335223 - Hsped.10g12220.1 Hepe10g1222 581769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1222 667 MobiDBLite consensus disorder prediction 228 254 - -
Hepe10g1222 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Hepe10g1222 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1222 667 MobiDBLite consensus disorder prediction 237 253 - -
Hepe10g1222 667 Gene3D - 343 662 IPR011989 -
Hepe10g1222 667 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Hepe10g1222 667 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Hepe10g1222 667 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1222 667 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Hepe10g1222 667 CDD MLKL_NTD 10 138 - -
Hepe10g1222 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1222 667 SUPERFAMILY RING/U-box 256 334 - -
Hepe10g1222 667 PANTHER U BOX DOMAIN-CONTAINING 29 630 - -
Hepe10g1222 667 CDD RING-Ubox_PUB 259 311 IPR045210 -
Hepe10g1222 667 MobiDBLite consensus disorder prediction 644 667 - -
Hepe10g1222 667 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Hepe10g1222 667 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Hepe10g1222 667 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Hepe10g1222 667 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1222 K27628 - - csv:101218572 1119.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1046 Hepe-Chr1:75165057 Hepe10g1222 Hepe-Chr10:47330852 3.31e-134 dispersed
Hepe02g2667 Hepe-Chr2:74293810 Hepe10g1222 Hepe-Chr10:47330852 2.07e-46 dispersed
Hepe04g1715 Hepe-Chr4:72229193 Hepe10g1222 Hepe-Chr10:47330852 4.45e-13 dispersed
Hepe07g2239 Hepe-Chr7:66798880 Hepe10g1222 Hepe-Chr10:47330852 5.95e-48 dispersed
Hepe08g1331 Hepe-Chr8:15233009 Hepe10g1222 Hepe-Chr10:47330852 1.10e-12 dispersed
Hepe08g1949 Hepe-Chr8:52935123 Hepe10g1222 Hepe-Chr10:47330852 2.01e-32 dispersed
Hepe09g0170 Hepe-Chr9:1354976 Hepe10g1222 Hepe-Chr10:47330852 3.57e-09 dispersed
Hepe09g1221 Hepe-Chr9:15368906 Hepe10g1222 Hepe-Chr10:47330852 2.36e-12 dispersed
Hepe09g1227 Hepe-Chr9:15748778 Hepe10g1222 Hepe-Chr10:47330852 8.52e-13 dispersed
Hepe10g0096 Hepe-Chr10:891512 Hepe10g1222 Hepe-Chr10:47330852 1.08e-34 dispersed
Hepe10g1222 Hepe-Chr10:47330852 Hepe10g1529 Hepe-Chr10:52040942 9.13e-36 dispersed
Hepe08g0340 Hepe-Chr8:3066365 Hepe10g1222 Hepe-Chr10:47330852 8.84e-90 transposed
Hepe08g1513 Hepe-Chr8:19068672 Hepe10g1222 Hepe-Chr10:47330852 7.84e-16 transposed
Hepe09g0778 Hepe-Chr9:7498162 Hepe10g1222 Hepe-Chr10:47330852 2.51e-16 transposed
Hepe10g1222 Hepe-Chr10:47330852 Hepe08g0796 Hepe-Chr8:7142474 2.37e-183 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
Hepe02g2080 . 1 899 U-box Gene Family AT5G15400 76.3 0.0e+00 1364.0
Hepe08g1171 . 196 829 U-box Gene Family AT2G23140 66.0 6.7e-118 421.8
Hepe10g0096 . 1 771 U-box Gene Family AT1G24330 59.4 6.2e-243 837.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G24330 65.5 4.8e-211 731.5
Hepe10g0096 . 1 770 U-box Gene Family AT1G67530 59.7 6.5e-240 827.4
Hepe10g1529 . 1 590 U-box Gene Family AT1G67530 65.2 4.0e-205 711.8
Hepe04g1801 . 1 362 U-box Gene Family AT4G21350 62.1 1.6e-119 426.4
Hepe06g1836 . 134 457 U-box Gene Family AT3G07360 57.8 1.2e-83 307.0
Hepe01g0523 . 258 444 U-box Gene Family AT1G71020 71.8 3.4e-74 276.2
Hepe02g2667 . 264 461 U-box Gene Family AT1G71020 55.0 7.5e-53 205.3
Hepe01g1046 . 217 421 U-box Gene Family AT1G71020 51.4 5.5e-48 189.1
Hepe08g0796 . 256 432 U-box Gene Family AT1G71020 56.3 9.5e-48 188.3
Hepe10g1222 . 258 427 U-box Gene Family AT1G71020 57.8 9.5e-48 188.3
Hepe01g0523 . 16 648 U-box Gene Family AT1G23030 57.1 6.1e-108 388.7
Hepe08g0796 . 93 636 U-box Gene Family AT2G28830 52.3 2.4e-101 366.7
Hepe10g1222 . 93 638 U-box Gene Family AT2G28830 57.3 3.6e-94 342.8
Hepe10g1222 . 1 648 U-box Gene Family AT3G46510 67.2 2.5e-160 562.8
Hepe08g0796 . 3 642 U-box Gene Family AT3G46510 64.7 1.4e-158 557.0
Hepe01g1046 . 9 628 U-box Gene Family AT3G46510 57.4 1.2e-120 431.0
Hepe01g1046 . 1 630 U-box Gene Family AT3G54850 67.4 3.6e-164 575.5
Hepe08g0796 . 13 629 U-box Gene Family AT3G54850 54.6 1.2e-111 401.0
Hepe08g0340 . 144 696 U-box Gene Family AT5G42340 64.0 3.3e-120 429.5
Hepe04g0691 . 1 667 U-box Gene Family AT5G01830 57.8 4.7e-202 701.4
Hepe07g1836 . 1 711 U-box Gene Family AT1G29340 60.6 1.7e-234 809.3
Hepe02g1008 . 27 442 U-box Gene Family AT5G37490 50.8 1.4e-111 400.2
Hepe05g0444 . 3 412 U-box Gene Family AT3G52450 52.2 1.5e-121 433.3
Hepe04g0644 . 7 425 U-box Gene Family AT3G52450 53.1 3.2e-119 425.6
Hepe05g0444 . 2 410 U-box Gene Family AT2G35930 54.3 1.2e-123 440.3
Hepe08g0193 . 6 407 U-box Gene Family AT2G35930 52.1 8.8e-119 424.1
Hepe04g0644 . 6 425 U-box Gene Family AT2G35930 52.7 3.3e-118 422.2
Hepe04g1125 . 1 402 U-box Gene Family AT5G64660 54.5 6.2e-120 427.9
Hepe04g1125 . 1 402 U-box Gene Family AT5G09800 51.7 7.2e-105 377.9
Hepe01g1842 . 1 454 U-box Gene Family AT3G49810 64.8 2.7e-161 565.5
Hepe08g1345 . 1 434 U-box Gene Family AT3G49810 62.8 2.7e-153 538.9
Hepe01g1842 . 1 454 U-box Gene Family AT5G65920 63.9 4.8e-155 544.7
Hepe08g1345 . 1 434 U-box Gene Family AT5G65920 64.5 7.2e-151 530.8
Hepe05g1955 . 73 948 U-box Gene Family AT2G45910 51.2 1.2e-231 800.0
Hepe06g1389 . 35 828 U-box Gene Family AT4G25160 53.8 2.6e-226 782.3
Hepe02g3127 . 60 556 U-box Gene Family AT5G40140 56.9 1.2e-91 334.3
Hepe07g2250 . 30 492 U-box Gene Family AT5G40140 50.4 1.2e-51 201.4
Hepe08g1513 . 4 812 U-box Gene Family AT1G76390 61.3 2.6e-271 931.8
Hepe08g1513 . 13 812 U-box Gene Family AT1G20780 62.7 1.7e-280 962.2
Hepe10g0096 . 1 773 U-box Gene Family AT1G27910 62.8 1.7e-264 909.1
Hepe10g1529 . 1 768 U-box Gene Family AT1G27910 55.1 1.4e-218 756.5
Hepe04g1316 . 1 591 U-box Gene Family AT5G67530 74.2 2.8e-259 891.3
Hepe05g1885 . 3 157 U-box Gene Family AT5G67530 53.5 3.2e-45 180.3
Hepe05g1688 . 1 517 U-box Gene Family AT1G04510 74.4 3.0e-225 778.1
Hepe05g1688 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Hepe06g1837 . 10 278 U-box Gene Family AT3G07370 65.4 4.7e-100 361.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43