Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1240 ATGGGTAAAACCGCCATTCTCCTCTGCATTGCGTCTCTCATCTCAACAATGTGGACGGCCGTCGCCAGAATCCCCGGCGTCTACTCCTTCGGCTCCTGGCAGACCGCCCACGCCACCTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTATACAGCCAAGGGTACGGGGTGAACACGGCGGCGTTGAGTACGGCGCTTTTCAACAATGGGCTGAGCTGCGGCGCTTGTTTCGAGATGAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCGTCGATTTTGATTACAGCGACCAATTTCTGCCCGCCGAACTTTGCTCTGCCCAGTGACAATGGCGGATGGTGTAACCCTCCTCGCCCACATTTCGATTTGGCCATGCCTATGTTCCTTAAGATTGCTGAGTACCGCGCCGGTATTGTCCCCGTCGCCTACCGCCGGGTGCCATGCCGGAAGCAAGGGGGGATCCGATTCACAATCCACGGGTTCAGGTACTTCAACTTGGTTTTAATCACCAACGTGGCGGGTGCAGGTGATATCGTGAGAGTGAGCGTGAAAGGCACGCGAACCGGCTGGATGACCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCCTATCTTTTAGAGTCACCGGCAGTGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCATCCGATTGGCAGTTCGGCCAGACCTTCCTCGGCAAGAATTTTAGGGTTTGA 780 57.18 MGKTAILLCIASLISTMWTAVARIPGVYSFGSWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEMKCANDPRWCHSGSPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMTMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFLGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47669621 47671272 - Hsped.10g12400.1 Hepe10g1240 581787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1240 259 PANTHER EXPANSIN-A15 16 257 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Hepe10g1240 259 CDD DPBB_EXPA_N 33 160 - -
Hepe10g1240 259 FunFam Expansin 165 257 - -
Hepe10g1240 259 SMART dpbb_1 68 155 IPR007112 -
Hepe10g1240 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Hepe10g1240 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Hepe10g1240 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Hepe10g1240 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
Hepe10g1240 259 Gene3D - 23 161 IPR036908 -
Hepe10g1240 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Hepe10g1240 259 FunFam Expansin 22 161 - -
Hepe10g1240 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Hepe10g1240 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Hepe10g1240 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Hepe10g1240 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Hepe10g1240 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Hepe10g1240 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Hepe10g1240 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Hepe10g1240 259 Gene3D - 165 257 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1202 Hepe-Chr6:61549136 Hepe10g1240 Hepe-Chr10:47669621 4.97e-94 dispersed
Hepe06g1601 Hepe-Chr6:66839854 Hepe10g1240 Hepe-Chr10:47669621 3.47e-52 dispersed
Hepe09g0111 Hepe-Chr9:892173 Hepe10g1240 Hepe-Chr10:47669621 6.29e-118 dispersed
Hepe10g0175 Hepe-Chr10:1772782 Hepe10g1240 Hepe-Chr10:47669621 6.39e-106 dispersed
Hepe10g1240 Hepe-Chr10:47669621 Hepe10g1755 Hepe-Chr10:54338219 3.73e-129 dispersed
Hepe02g2415 Hepe-Chr2:69998780 Hepe10g1240 Hepe-Chr10:47669621 6.22e-91 transposed
Hepe02g0880 Hepe-Chr2:10517200 Hepe10g1240 Hepe-Chr10:47669621 2.05e-52 transposed
Hepe01g0330 Hepe-Chr1:48956851 Hepe10g1240 Hepe-Chr10:47669621 2.38e-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1240 - - - 0.0