Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1249 ATGGATAATCTACTCGACGATTTTCCCAATTCCTGGAACAATTTTCACTTCAATCCCCATCTCTCAAATGGGTTCAAAATCAACCGCGAAATCGTCGATCCCCTTCAGATTCCGGCCATGCCACAGCAACAGCAACATCAACATCAACTCAGTAACAATTCTTCTTCCTCGTTCTCGTCTCCGTCGAGCTCCGAGGGCGACTCGCCGGACAGCCATGACACCTCAAATACGATGCTGAAATACATCACGGAGATGCTGATGGACGAAGAAGAGGATCTAAAAAAGAAGCCATGTATGCTTTTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAGTCTTTTTATGATGTTCTAGGTCAGAAATATCCACCTTCTCCTAATTCTGGTCAGAGTTTTAGCTGTGATTTAAGTTTAAGTAAGGGTGAAGATGAATCTGTATCTGAATCTTTTAGTGGAAATTCCTCTGTTTTTGTTGCCCCTTTTGAAAGCTCTGATTTGAGTCCAGATTCATTTCTTGGGATGCAATTTATTGGCCATTTTAGGAAAGGAGCTGAGGAGGCTAGCAAGTTTCTTCCTGTTAATGGAAGATTTGGGACCATTGATTTGGATAATGATTCATCTAGGGCTGTGGATTTTTCTTGGCTTGAAAATGGGTTGTTGAGAGAGAAGAAGAATCATGGGAGGGAGGATAGTGATGAGGAGTTGAGAAGTAGTAAGCAATCTGCTACTTTTGCTGATGATAGTTCACTGTCTGAGTTGTTTGATGAGGTTCTGCTCTGTCGGGGCGAGAGTCGGCAGTCCCCGTCGTGCGGTTCGGAGGAATCGTCGGAGAACGAAGCGAATAAGAAGTCTAGAAGGGGAGCGAAAGGGAAGAAGAAGAAGAAGAATCGTTCTAGGAAGCAAGAGAATAATGTGGAAGTTGTGGATTTATGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCTAATTATGATCAAAGGACTGCAAATGATCTGCTTAATCAGATCAGGCAGCATTCTAATACATCTGGGGATGGAAATCAAAGATTAGCTCATTACTTTGCGAATGGCCTTGAGACTCGGCTTGCAGCCGGGACGCCTCTCTATATGCCCTTTGCAAGCAATGAAACCTCTGCTGCTGAGATCTTGAAGGCTTTCCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGGATGTCGTATTTCTACGCCAATCGATTGATTCTGAAGCTAGCTGAGAAAGTAACATCGCTGCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAGCGGCTCTCGCGCAGACCTGGTGGACCTCCCAAGCTTCGGATCACGGGGATCGAGCTTCCCCAGCCGGGATTCCGGCCCGCCGAACGGATTGAGCAGACTGGACGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAAGTCTTGGCACGGAAATGGGAAACTGTTAGATATGAGGATCTCAATGTTGACAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACCGTGGTCGCTAACAGCCCGAGAGACAGGGTTCTGAAGTTGATAAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAATGGCTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGAATCACTCTTTTACTACTCATCATTGTTCGACATGTACGAGGCAACGGTGCCTCGAGATAGTCCACAGAGGCATCTATGTGAGAAGGAAATCCTAGGAAGAGACATCGTGAATGTCATAGCGTGTGAGGGGCTCGAGAGAGTCGAGAGGCCAGAGACGTACAAGCAATGGCAAGTAAGGAACACGAGAGCCGGGTTCAAGCAAGTACCATTAGACCAAGAACTACTTAAGAGTGTGAAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGATCAGGACGGGGCGTGGATGTTGCAAGGGTGGAAGGGACGGATCATCGACGGGTTGTCATGTTGGGTAGTTGCCTAA 2046 45.89 MDNLLDDFPNSWNNFHFNPHLSNGFKINREIVDPLQIPAMPQQQQHQHQLSNNSSSSFSSPSSSEGDSPDSHDTSNTMLKYITEMLMDEEEDLKKKPCMLFDCLALQAAEKSFYDVLGQKYPPSPNSGQSFSCDLSLSKGEDESVSESFSGNSSVFVAPFESSDLSPDSFLGMQFIGHFRKGAEEASKFLPVNGRFGTIDLDNDSSRAVDFSWLENGLLREKKNHGREDSDEELRSSKQSATFADDSSLSELFDEVLLCRGESRQSPSCGSEESSENEANKKSRRGAKGKKKKKNRSRKQENNVEVVDLWTLLTQCAQAVSNYDQRTANDLLNQIRQHSNTSGDGNQRLAHYFANGLETRLAAGTPLYMPFASNETSAAEILKAFQMFIKACPFRRMSYFYANRLILKLAEKVTSLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERIEQTGRRLAHYCKRFNVPFEHKVLARKWETVRYEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKESLFYYSSLFDMYEATVPRDSPQRHLCEKEILGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKSVKKIVNTEYHQDFVIDQDGAWMLQGWKGRIIDGLSCWVVA 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47888628 47891019 + Hsped.10g12490.1 Hepe10g1249 581796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1249 681 MobiDBLite consensus disorder prediction 224 239 - -
Hepe10g1249 681 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 277 672 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe10g1249 681 ProSiteProfiles GRAS family profile. 300 679 IPR005202 -
Hepe10g1249 681 MobiDBLite consensus disorder prediction 224 247 - -
Hepe10g1249 681 MobiDBLite consensus disorder prediction 263 300 - -
Hepe10g1249 681 Pfam GRAS domain family 311 678 IPR005202 -
Hepe10g1249 681 MobiDBLite consensus disorder prediction 40 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1249 Hepe-Chr10:47888628 Hepe10g1981 Hepe-Chr10:56869049 3.85e-61 dispersed
Hepe10g1249 Hepe-Chr10:47888628 Hepe05g0168 Hepe-Chr5:2073651 3.52e-182 wgd
Hepe10g1249 Hepe-Chr10:47888628 Hepe08g0779 Hepe-Chr8:6977131 2.55e-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56511 PF03514 GRAS 1.30E-113 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1249 K27753 - csv:101217374 1108.2