Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1262 ATGGGAGAGGAGGTGAAGATGGGAGAATATGAGAGCGGTGGTGGTGAAGATGAAAGCGGTGATCATGAGGAGCGGATATTTGAATGGGAGACTGGTTTGCCTGATGCGGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCGCCGGAGCTTGCATCTGCATTCAGTATATCCACGGGACCCTTTCGGACGGTTATGGATGTTAATCGGGCGTCGCGGAATACACTATCGAATCTTCGTGGATTTCAATCGCAAGCGTTTTCCTCCAATAATTTCAAGGCGTTTAATGATATTGATCGGACTCCGGATCATGATCCGGTGGTGGTTGAAGGAGATGAGCCTACCGAGAGAGATTCCGGGTCGGATTTTAGGAAATTGAGGAAGATTGATTGTGCGGAGGAGGCTGATTCGGCTCTTAGGACTGATAATTCGATGGAGGATCCCTTGTCGGCTCGGACTTTGAAGAGACCGAGGCTTGTTTGGACGCCGCAATTACACAAGCGGTTTGTCGACGTTGTTGCTCATCTTGGGATTAAGAACGCCGTTCCTAAAACTATTATGCAGTTGATGAACGTCGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGCCCGTCCTCGCCGGACCGCCTTTTCGCCTCCACGCCTGTACCGCAGAGCTCGCATGAGCCGACCAACAGTAGTGGGAATGCCATTGGAAATGGGCATTTGCCAGTTCCGACTCCGATGTCGTATGGACCGCCGATGATGCCTATGCCTATGCCTATGCCTATGCCGATGCTTGGCATGGCAGCACCTGGTCATGCTCACAGTTATATGGGTATGCCTATCGCTCATCCGGGCAGCGCGCAGGGATACCATGGCTTTGAAACGCATCCTTACAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCGTACCCTCATCCTCATGTACCTCATAGTACTAATGATAAGTGA 1029 50.63 MGEEVKMGEYESGGGEDESGDHEERIFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPFRTVMDVNRASRNTLSNLRGFQSQAFSSNNFKAFNDIDRTPDHDPVVVEGDEPTERDSGSDFRKLRKIDCAEEADSALRTDNSMEDPLSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSSHEPTNSSGNAIGNGHLPVPTPMSYGPPMMPMPMPMPMPMLGMAAPGHAHSYMGMPIAHPGSAQGYHGFETHPYNMMHQRDWSGNKYGSIVPYPHPHVPHSTNDK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48112377 48115768 + Hsped.10g12620.1 Hepe10g1262 581809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1262 342 MobiDBLite consensus disorder prediction 98 122 - -
Hepe10g1262 342 FunFam Two-component response regulator 152 215 - -
Hepe10g1262 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 157 209 IPR006447 GO:0003677(InterPro)
Hepe10g1262 342 SUPERFAMILY Homeodomain-like 153 213 IPR009057 -
Hepe10g1262 342 MobiDBLite consensus disorder prediction 216 251 - -
Hepe10g1262 342 Gene3D - 153 215 - -
Hepe10g1262 342 MobiDBLite consensus disorder prediction 1 25 - -
Hepe10g1262 342 Pfam Myb-like DNA-binding domain 159 208 IPR001005 -
Hepe10g1262 342 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 318 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe10g1262 342 MobiDBLite consensus disorder prediction 215 256 - -
Hepe10g1262 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 212 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1262 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0521 Hepe-Chr4:57695291 Hepe10g1262 Hepe-Chr10:48112377 3.77e-42 dispersed
Hepe05g0644 Hepe-Chr5:10475095 Hepe10g1262 Hepe-Chr10:48112377 2.93e-41 dispersed
Hepe10g0068 Hepe-Chr10:662676 Hepe10g1262 Hepe-Chr10:48112377 1.89e-16 dispersed
Hepe10g1262 Hepe-Chr10:48112377 Hepe03g0505 Hepe-Chr3:8523341 1.16e-07 dispersed
Hepe10g1262 Hepe-Chr10:48112377 Hepe08g0771 Hepe-Chr8:6900999 1.31e-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56512 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Hepe TF