Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1262 ATGGGAGAGGAGGTGAAGATGGGAGAATATGAGAGCGGTGGTGGTGAAGATGAAAGCGGTGATCATGAGGAGCGGATATTTGAATGGGAGACTGGTTTGCCTGATGCGGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCGCCGGAGCTTGCATCTGCATTCAGTATATCCACGGGACCCTTTCGGACGGTTATGGATGTTAATCGGGCGTCGCGGAATACACTATCGAATCTTCGTGGATTTCAATCGCAAGCGTTTTCCTCCAATAATTTCAAGGCGTTTAATGATATTGATCGGACTCCGGATCATGATCCGGTGGTGGTTGAAGGAGATGAGCCTACCGAGAGAGATTCCGGGTCGGATTTTAGGAAATTGAGGAAGATTGATTGTGCGGAGGAGGCTGATTCGGCTCTTAGGACTGATAATTCGATGGAGGATCCCTTGTCGGCTCGGACTTTGAAGAGACCGAGGCTTGTTTGGACGCCGCAATTACACAAGCGGTTTGTCGACGTTGTTGCTCATCTTGGGATTAAGAACGCCGTTCCTAAAACTATTATGCAGTTGATGAACGTCGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGCCCGTCCTCGCCGGACCGCCTTTTCGCCTCCACGCCTGTACCGCAGAGCTCGCATGAGCCGACCAACAGTAGTGGGAATGCCATTGGAAATGGGCATTTGCCAGTTCCGACTCCGATGTCGTATGGACCGCCGATGATGCCTATGCCTATGCCTATGCCTATGCCGATGCTTGGCATGGCAGCACCTGGTCATGCTCACAGTTATATGGGTATGCCTATCGCTCATCCGGGCAGCGCGCAGGGATACCATGGCTTTGAAACGCATCCTTACAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCGTACCCTCATCCTCATGTACCTCATAGTACTAATGATAAGTGA 1029 50.63 MGEEVKMGEYESGGGEDESGDHEERIFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPFRTVMDVNRASRNTLSNLRGFQSQAFSSNNFKAFNDIDRTPDHDPVVVEGDEPTERDSGSDFRKLRKIDCAEEADSALRTDNSMEDPLSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSSHEPTNSSGNAIGNGHLPVPTPMSYGPPMMPMPMPMPMPMLGMAAPGHAHSYMGMPIAHPGSAQGYHGFETHPYNMMHQRDWSGNKYGSIVPYPHPHVPHSTNDK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48112377 48115768 + Hsped.10g12620.1 Hepe10g1262 581809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1262 342 MobiDBLite consensus disorder prediction 98 122 - -
Hepe10g1262 342 FunFam Two-component response regulator 152 215 - -
Hepe10g1262 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 157 209 IPR006447 GO:0003677(InterPro)
Hepe10g1262 342 SUPERFAMILY Homeodomain-like 153 213 IPR009057 -
Hepe10g1262 342 MobiDBLite consensus disorder prediction 216 251 - -
Hepe10g1262 342 Gene3D - 153 215 - -
Hepe10g1262 342 MobiDBLite consensus disorder prediction 1 25 - -
Hepe10g1262 342 Pfam Myb-like DNA-binding domain 159 208 IPR001005 -
Hepe10g1262 342 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 318 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe10g1262 342 MobiDBLite consensus disorder prediction 215 256 - -
Hepe10g1262 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 212 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0521 Hepe-Chr4:57695291 Hepe10g1262 Hepe-Chr10:48112377 3.77e-42 dispersed
Hepe05g0644 Hepe-Chr5:10475095 Hepe10g1262 Hepe-Chr10:48112377 2.93e-41 dispersed
Hepe10g0068 Hepe-Chr10:662676 Hepe10g1262 Hepe-Chr10:48112377 1.89e-16 dispersed
Hepe10g1262 Hepe-Chr10:48112377 Hepe03g0505 Hepe-Chr3:8523341 1.16e-07 dispersed
Hepe10g1262 Hepe-Chr10:48112377 Hepe08g0771 Hepe-Chr8:6900999 1.31e-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56512 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1262 - - - 0.0