Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1275 ATGGGGGAGGAAGTGCCCATTTTGAGAACAGAACATTGGTATGAAGTTAAGAAAAGGAATGTTTCTGTTCCCAGTTCCCCAGATATAAAATGTTGCAATTCTGGCTGTGCATTTTCCAAATTGGAACACAGTAATTTGGAGTCATTAAAACGTTCTAAGTCAGCTATGAAGCTTGGTGGATTGATAATTTTCTATGTTGTAGCTATAATAGTAGAGATCATTGGTGGTTTGAGAGCCAACAGTCTTGCTGTAATGACAGATGCAGCTCACTTACTCAGTGATGTTGCTGGTTTTGCTGTTTCCCTCTTTGCCATTTGGGTTTCCGGCTGGGATGCGACACCGCAACACTCTTTCGGGTTTAATCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTATACAGCTCATATGGCTCATTTCTGGGGTCTTGATCTACGAGGCAATCGACCGGATTCTTCGCCAAAAGACAAAGGTGGATGGATTGCTTATGTTTGCCATTGCAGCTTTCGGGTTCCTCCTTAACTTAGTTATGGTCATGTGGCTTGGCCATAGCCATAGCCATAACCACTCTCATTCTCATAGTTGTCATGATAATCATCACTCTCATCAGAATCACTTGGATCATCACAATGACCATGAGAAGGAGGAGATTTGCTCAATGACCATTCAAGAATCTGCTTCTTTGGGGTCAACAAAGGACAATAACATAAATCTCCAAGGTGCTTATCTTCATGTTATCACTGATATGATTCAATCTATTGGTGTGATGATTGCTGGAGCCATTCTATGGCTTAAACCTGAATGGATCGTCGTCGATTTAATCTGCACTCTTGTGTTTTCTGTTCTTGCTTTAGCTACCACTTTCTCTATGCTTAGACATATAGGTGGTATATTGATGGAAGGAACACCTAGGGAGGTCCATCTTGAGAGCCTAAAAACGGACATCAAGAACATAAAAGGAGTCCTTGCTTTGCATGACTTTCATATTTGGTCGATAACGGTCGGAAAAGTCGTGTTGTCTTGCCATGTTATAGGAGAACCCGGAGTTTGTTCTAGGGAGATAATTTCTAAGATTAGGATCCTGTGTGAAAAGAGATACAGTATAGTTCATACCACCATACAAGTGGAGTAG 1128 41.49 MGEEVPILRTEHWYEVKKRNVSVPSSPDIKCCNSGCAFSKLEHSNLESLKRSKSAMKLGGLIIFYVVAIIVEIIGGLRANSLAVMTDAAHLLSDVAGFAVSLFAIWVSGWDATPQHSFGFNRLEVLGALVSIQLIWLISGVLIYEAIDRILRQKTKVDGLLMFAIAAFGFLLNLVMVMWLGHSHSHNHSHSHSCHDNHHSHQNHLDHHNDHEKEEICSMTIQESASLGSTKDNNINLQGAYLHVITDMIQSIGVMIAGAILWLKPEWIVVDLICTLVFSVLALATTFSMLRHIGGILMEGTPREVHLESLKTDIKNIKGVLALHDFHIWSITVGKVVLSCHVIGEPGVCSREIISKIRILCEKRYSIVHTTIQVE 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48334981 48336688 + Hsped.10g12750.1 Hepe10g1275 581822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1275 375 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 304 375 IPR036837 -
Hepe10g1275 375 MobiDBLite consensus disorder prediction 190 209 - -
Hepe10g1275 375 Pfam Cation efflux family 62 297 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe10g1275 375 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 29 375 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Hepe10g1275 375 SUPERFAMILY Cation efflux protein transmembrane domain-like 58 299 IPR027469 -
Hepe10g1275 375 Gene3D Cation efflux protein transmembrane domain 58 297 IPR027469 -
Hepe10g1275 375 NCBIfam cation diffusion facilitator family transporter 62 375 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1275 Hepe-Chr10:48334981 Hepe10g1277 Hepe-Chr10:48348564 9.66e-229 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1275 K14689 - csv:101215692 548.125