Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1277 ATGGGGGAGGAAGTGCCCATTTTGAGAACAGAACATTGGCATGAAGTTAAGAACAGGAATGGCTCTGTTCCCAGTTCCCCAGATATAAATTGTTGCAATTCTGGCTGTGCGTTTTCCAAATTGGAACACAGTAATTTGGAGTCATTAAAACGTTCTAAGTCAGCTATGAAGCTTGGTGGATTGATATTTTTCTGTGTTGTAGCTATAATAGTAGAGATTATTGGTGGTTTGAGAGCCAACAGTCTTGCTGTAATGACAGATGCAGCTCACTTACTCAGTGATGTTGCTGGTTTTGCTGTTTCCCTCTTTGCCATTTGGGTTTCCGGCTGGGAGGCGACACCGCAACACTCTTTCGGGTTTAACCGTCTTGAAGTTTTAGGCGCCCTTGTGTCTGTACAGCTCATATGGCTCATTTCCGGGGTCTTGATCTACGAGGCAATCAACCGGATTCTTCGCGAAAAGACAAAGGTCGATGGATTGCTTATGTTTGCCATTGCAGCTTTCGGGTTCCTCCTTAACTTAGTTATGGTCATGTGGCTTGGCCATAGCCATAGCCATAACCACTCTCATTCTCATAGTTGTCATGATAATCATCACTCTCATCAGAATCACTTGGATCATCACAATGACCATGAGAAGGAGGAGATTTGCTCAATGACCATTCAAGAAGCTGCTTCTTTGGGGTCAACAAAGGACAATAACATAAATCTCCAAGGTGCTTATCTTCATGTTATCACTGATATGATTCAATCTATAGGTGTAATGATTGCTGGAGCCATTCTATGGCTTAAACCCGAATGGATCGTCGTCGATTTGATCTGCACTCTTGTGTTTTCTGTTCTTGCTTTAGCTACCACTTTCTCTATGCTTAGACATATAGGTGGTATATTGATGGAAGGAACTCCTAGGGAAGTCAATCTTGAGAGGATAGAAAATGACATCAAGAACATAAAAGGAGTCCATGCTTTGCACGACTTGCACATTTGGTCGATAACGGTCGGAAAAGTCGTGTTGTCTTGCCATGTTATAGCCGAACCCGAAGTTTGTTCTAGGGAGATAATTTCTAAGATTAGGAACCTGTGTGAAAAGAGATACAGTATAGTTCATACCACCATACAAGTGGAGTAG 1128 42.38 MGEEVPILRTEHWHEVKNRNGSVPSSPDINCCNSGCAFSKLEHSNLESLKRSKSAMKLGGLIFFCVVAIIVEIIGGLRANSLAVMTDAAHLLSDVAGFAVSLFAIWVSGWEATPQHSFGFNRLEVLGALVSVQLIWLISGVLIYEAINRILREKTKVDGLLMFAIAAFGFLLNLVMVMWLGHSHSHNHSHSHSCHDNHHSHQNHLDHHNDHEKEEICSMTIQEAASLGSTKDNNINLQGAYLHVITDMIQSIGVMIAGAILWLKPEWIVVDLICTLVFSVLALATTFSMLRHIGGILMEGTPREVNLERIENDIKNIKGVHALHDLHIWSITVGKVVLSCHVIAEPEVCSREIISKIRNLCEKRYSIVHTTIQVE 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48348564 48350183 - Hsped.10g12770.1 Hepe10g1277 581824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1277 375 Gene3D Cation efflux protein transmembrane domain 58 297 IPR027469 -
Hepe10g1277 375 NCBIfam cation diffusion facilitator family transporter 62 375 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe10g1277 375 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 20 375 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Hepe10g1277 375 Pfam Cation efflux family 62 297 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe10g1277 375 SUPERFAMILY Cation efflux protein transmembrane domain-like 58 299 IPR027469 -
Hepe10g1277 375 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 304 375 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1906 Hepe-Chr2:31659078 Hepe10g1277 Hepe-Chr10:48348564 2.10e-15 dispersed
Hepe06g1419 Hepe-Chr6:64604437 Hepe10g1277 Hepe-Chr10:48348564 2.00e-93 dispersed
Hepe10g1275 Hepe-Chr10:48334981 Hepe10g1277 Hepe-Chr10:48348564 9.66e-229 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1277 K14689 - csv:101215692 541.962