Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1320 ATGGGTTTGGATGAGCCGCTGGTTTTTGGTGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTGGTTGTGGGGAGGAGGCCGTTTGGATTGGTTAGAGATTTGTGGGGGAATTTGCTGAAAGTGGTTTTTGGAACGAAGCTTGCTGTGCTTTTTCCGGCGATCCCTTTAGCTGTGGCGGCGGATTTTTACAACTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTTCACAGGGCCCACAGTTGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTGATAATAGCAATTTTTGCTCTTCACCAAAACAAAATCCATGTCTTGAAGTTTTCACTTTTGGGTTCCATTCTTTCCAATTTGCTCCTAGTCCTTGGCACCTCTCTTCTCTTTGGGGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAATGCGGCCAATGTGAGCTCTGTGTTGTTGCTGCTGGGATTGCTATGCCAAATGCTGCCATTGATGTTCAGATTTGCATCACCATTAGGCAAAATCTCAACAGACAATTCTGTACTTGAGTTATCAAGAACTTGCAGCATTTTAATGCTCACAGCATATATTGCTTATGTCTTCTTCCAGTTGAATACCCACCACCAATTTTTTGGCCTCCCACAGGAGGAAGAAGAGGAAGAAGAAATGGCAGTAGTAGGATTTTGGAGCTCATTTTGTTGGCTGGTTGGTATGACCATTGTCATAGCTATATTATCACAATATATTGTGGCAACAATTGAGGATATAACACTTGGGATAACCTTGGGATCAGCAGCCCAAATTTCCCTCTTTGTGGGGCCTTTGAGTGTAATTGTTGGATGGTGTATGGGCATCAAAATGGATCTTGATTTTGGTCTCCTTGAAACAACTTCTCTTGCCTTCACCATCATTTTGACTATCTTCACTTTACAGGATGGAAATTCACATTACATCAAAGGAATGGTGGAAGGAAATAGTGGTGGAGATTATGATGTACACGTGCTAGTTGACTAG 1086 43.65 MGLDEPLVFGDLEINGGGETAAVVVGRRPFGLVRDLWGNLLKVVFGTKLAVLFPAIPLAVAADFYNFGRTWTFGLSLLGLAPLAERVSFLTEQIACFTGPTVGGLVNATCGNATELIIAIFALHQNKIHVLKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNPNAANVSSVLLLLGLLCQMLPLMFRFASPLGKISTDNSVLELSRTCSILMLTAYIAYVFFQLNTHHQFFGLPQEEEEEEEMAVVGFWSSFCWLVGMTIVIAILSQYIVATIEDITLGITLGSAAQISLFVGPLSVIVGWCMGIKMDLDFGLLETTSLAFTIILTIFTLQDGNSHYIKGMVEGNSGGDYDVHVLVD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 49113599 49121528 - Hsped.10g13200.1 Hepe10g1320 581867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1320 361 Gene3D - 100 347 IPR044880 -
Hepe10g1320 361 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 279 346 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Hepe10g1320 361 Pfam Sodium/calcium exchanger protein 70 228 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g0368 Hepe-Chr8:3303315 Hepe10g1320 Hepe-Chr10:49113599 1.40e-68 dispersed
Hepe10g1320 Hepe-Chr10:49113599 Hepe04g0753 Hepe-Chr4:61536010 1.19e-118 wgd
Hepe10g1320 Hepe-Chr10:49113599 Hepe05g0092 Hepe-Chr5:989793 4.08e-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1320 K07300 - csv:105436053 483.796