Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1367 ATGGTTGACAACGGCGAGGAGAAGTTACTGGCCATGGCTCGCCACATAGCCAAGACTATGGGCCGGAACGAATCCATGGCCGATGATATTCTTCAGATTTTTTCCAATTTCGATGCTAGGTTTTCCCTTGATAAGCTCTCTGATAAACCCGATGACCTTGATTCCAGAGGCTCCGCCGCTTTGCAGCGTTCTCTCAAGTCTTTGGACCGCCGGATCTCCCAATACTTGGCCGCCGACCACCCGATTTGGGCCGATTCCGCCGATTCCTCTGCTTTTCTTGATGCTATTGATGAGTTGATGGCCACTATTAGGGATTGGACGCCGATGGCTAGGGATAAGTCTGTTGCCACCTACCTCGCTCGCGCAGACGATCTCATGCAACAGGCGATGTTCCGCATCGTCGAAGAGTTCCGGTCGTTGATGGAACGCGGAGGTGAGTCTTTTGAACTGACTCGCCATTTCAGGAACGGGGAGTCAACGGGCGATTTTTTCTTCGATTCTGAGGAGGATGAGGAAGGTGCGGAAGGAATTCTTGGCGACGGCCTCCAGATCCCCGTGGCGCAGCCGGTGACGGACTACAACATCTTAATCGATGCGCTTCCGTCGGGGACTATCAGCGATCTCCATGAGATAGCCAAGCGTATGGTGGCGGCTGGATTCGAGAAGGAGTGTTCGCACGCTTACAGTAGCTGCAGGAGGGAGTTCTTAGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAAATGCGATGGCAAGATCTCGAAGAGGAGATTGAGCGCTGGATGAAAGCGATTACCGTATCCCTTCGAGTCCTCTTCCCAAGCGAACGACGGCTCTGCGAACGCATCTTCGTCGGTCTCTCCTCCACCGCTGACCTCTCTTTCATGGAGGTCTGCCGAGGAACGACGATTCAGCTACTGAATTTTGCAGATGCGGTCGCAATTGGCTCGCGAGCACCGGAACGACTCTTCAAAATCCTCGACATGTTCGATACCTTGAGAGACTTGATGCCGGAGTTTGATTCGGTATTTTCGGATCAGTACTGCTCGTTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAGGGAATCTTCATGGAGCTTGAGAATTTGATCCGTCGTGATCCGGCTAAAACTCCAGTGCCGGGGGGTGGTCTTCATCCAATTACTCGATATGTGATGAATTACCTTAAGGCAGCCTGTAAATCGCGGCAGACTTTGGAGCAAGTTTTCGAAGAAGCCGCTCTTCCCTCTAAGGATTACACCAAGCTCGAGGACAGAGCAGCCACGTCGTCTTCGTTATCAGTTCAAATGGACTGGATTATGGAGCTTTTAGAGAGTAATTTAGAGGCGAAGTCGAAGATATACAAGGATCTGTCCTTAAGCTATGTGTTTCTGATGAACAATGGCCGATACATTGTTCAGAAAGTGAAAGACAGTGAATTAGGATTGGTTCTAGGCGACGATTGGATCCGAAAGCACTCGGTTAAAAGCCGGCAATACCTCGGGAATTACCTGAAAAGCTCATGGAGCAAAGTGGTCGGAGTATTGAAAATAGACAGTGGCTCTTTAGCTCCGGCTGTAATGAAAGAGAAGCTCAAATCATTCAATATGCAGTTTGAAGAAATCTGCCAAACCCAATCTACATGGGTGATATTTGAGCATCAGCTTAGAGAAGAAGCAAGAATCTCAGTTGCCAAAGTCCTGATACCGGCATATCGAAATTTCATCGGAAGGTACAAGAGTTTGCCCGAGTTGGCAAAGCATACAGACCGGTATTTGAAGCACACGGCGGAGGATGTGGAGGCTTGGATCACCGAGCTTTTCGAAGGAGGAGGCGGCGGCGGAAAGAAGTAA 1896 49.53 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKPDDLDSRGSAALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDAIDELMATIRDWTPMARDKSVATYLARADDLMQQAMFRIVEEFRSLMERGGESFELTRHFRNGESTGDFFFDSEEDEEGAEGILGDGLQIPVAQPVTDYNILIDALPSGTISDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMRWQDLEEEIERWMKAITVSLRVLFPSERRLCERIFVGLSSTADLSFMEVCRGTTIQLLNFADAVAIGSRAPERLFKILDMFDTLRDLMPEFDSVFSDQYCSLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLKAACKSRQTLEQVFEEAALPSKDYTKLEDRAATSSSLSVQMDWIMELLESNLEAKSKIYKDLSLSYVFLMNNGRYIVQKVKDSELGLVLGDDWIRKHSVKSRQYLGNYLKSSWSKVVGVLKIDSGSLAPAVMKEKLKSFNMQFEEICQTQSTWVIFEHQLREEARISVAKVLIPAYRNFIGRYKSLPELAKHTDRYLKHTAEDVEAWITELFEGGGGGGKK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 49930044 49932610 + Hsped.10g13670.1 Hepe10g1367 581914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1367 631 Pfam Exocyst complex component Exo70 N-terminal 86 142 - -
Hepe10g1367 631 Gene3D Exocyst complex component Exo70 82 627 - -
Hepe10g1367 631 SUPERFAMILY Cullin repeat-like 83 623 IPR016159 -
Hepe10g1367 631 Pfam Exo70 exocyst complex subunit C-terminal 267 619 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Hepe10g1367 631 PANTHER EXOCYST COMPLEX PROTEIN EXO70 50 624 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Hepe10g1367 631 FunFam Exocyst subunit Exo70 family protein 76 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1367 K07195 - - csv:101204511 1089.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1072 Hepe-Chr4:65363907 Hepe10g1367 Hepe-Chr10:49930044 7.80e-107 dispersed
Hepe05g1167 Hepe-Chr5:57304545 Hepe10g1367 Hepe-Chr10:49930044 1.36e-116 dispersed
Hepe07g2107 Hepe-Chr7:65393664 Hepe10g1367 Hepe-Chr10:49930044 1.61e-124 dispersed
Hepe07g2463 Hepe-Chr7:68943329 Hepe10g1367 Hepe-Chr10:49930044 1.62e-84 dispersed
Hepe08g1332 Hepe-Chr8:15283444 Hepe10g1367 Hepe-Chr10:49930044 4.90e-31 dispersed
Hepe10g1151 Hepe-Chr10:45499324 Hepe10g1367 Hepe-Chr10:49930044 5.98e-81 dispersed
Hepe10g1367 Hepe-Chr10:49930044 Hepe09g0051 Hepe-Chr9:422913 4.24e-126 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1104 . 41 684 EXO70 exocyst subunit family AT5G03540 76.1 1.4e-283 972.2
Hepe04g1072 . 1 637 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 885.9
Hepe04g1072 . 1 637 EXO70 exocyst subunit family AT5G52340 78.2 2.8e-289 991.1
Hepe01g1104 . 43 684 EXO70 exocyst subunit family AT5G52340 73.5 6.4e-270 926.8
Hepe04g1072 . 145 630 EXO70 exocyst subunit family AT5G52350 62.2 3.7e-171 598.6
Hepe01g1104 . 178 684 EXO70 exocyst subunit family AT5G52350 58.0 3.4e-164 575.5
Hepe10g1367 . 1 630 EXO70 exocyst subunit family AT5G58430 67.1 1.0e-248 856.3
Hepe10g1367 . 1 623 EXO70 exocyst subunit family AT1G07000 52.7 9.3e-178 620.5
Hepe05g1167 . 58 661 EXO70 exocyst subunit family AT5G13150 52.1 8.3e-172 600.9
Hepe02g2406 . 115 722 EXO70 exocyst subunit family AT5G13990 52.2 8.5e-183 637.5
Hepe05g0540 . 50 353 EXO70 exocyst subunit family AT5G13990 54.7 2.3e-95 347.1
Hepe02g1550 . 9 606 EXO70 exocyst subunit family AT1G72470 64.4 1.5e-213 739.6
Hepe02g1550 . 9 604 EXO70 exocyst subunit family AT1G54090 61.2 6.0e-204 707.6
Hepe02g1550 . 9 605 EXO70 exocyst subunit family AT3G14090 64.2 1.1e-218 756.5
Hepe07g2107 . 19 656 EXO70 exocyst subunit family AT5G50380 63.4 7.0e-230 793.9
Hepe09g0051 . 14 651 EXO70 exocyst subunit family AT5G50380 62.0 1.8e-225 779.2
Hepe10g0323 . 16 682 EXO70 exocyst subunit family AT4G31540 73.4 1.8e-294 1008.4
Hepe01g0852 . 54 612 EXO70 exocyst subunit family AT2G39380 50.2 6.7e-150 528.1
Hepe05g0203 . 36 638 EXO70 exocyst subunit family AT3G09520 54.2 1.4e-176 616.7
Hepe05g0204 . 1 638 EXO70 exocyst subunit family AT3G09520 51.5 1.6e-172 603.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33