Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1368 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCAAATTCCCATCCCACCTTCACTTTCTCCACCCATCCTTTCATGACTTCTTCTTACTCTGACCTTCTCTCCTCCGATCTCCCTTCCTCTGCTATTCCTCTCCGCCCTTCCGGCACCGGAGTTCCTAAATTCAAATCTCTCCCTCCTCCTTCTCTCCCCCTCTCTCCGCCCCCTCTCTCTCCTTCCTCCTTCTTCGCCATTCCTCCCGGCTTGAGCCCCGCCGAGCTTCTCGATTCGCCTGTTCTACTCAGTGCTTCTCATGCTCTGCCGTCGCCGACCACCGGGAGCTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTTGGGGTTTAATCATTATAATCAGCAGAGCATCAAAGAAGAAAATAAATTCTTGTCTAATTTCTCATTTCAAACTCAATCGTCTAAGCTGCCGCCGACTTCTTTTCAGCCGTCATCCACCGTAGCTCCGCCTACTCAGGGATGGAGTTTTCTAGAACAGGGCAAGAAACAGGACGGTTTTTTGACGGAGAAGAATATGGTGAAGCCGGAGTTTGGATCGATGCAGAGCTTCTCGCCGGATTATGGGGTTGTGCAAAACCAGAGCCAAAACAACGGCGGCGGAGAGTTGCAGCCCGATTACAGCAACAATTACCCTCAACAATCGCAGACGTTGAATCGGAAGTCCGACGACGGCTATAACTGGAGAAAATACGGCCAAAAACAGGTCAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTTGAAAGATCCTTAGATGGACAGATCACAGAGATCGTTTACAAAGGCAGTCATAACCATCCCAAGCCCCAATCCACGAGGAGGTCGTCGTTGTCGTCGGCCGGTTCTTCCCATTCCATGGCGGCTTCAAATCCAGCCGCCAACGACATGGGGGACCAGTCATTTACGACCCAAGGAAGCGGCCAATACGACGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATCGGTGACGAGGACTTCGATCGGAGCTCTCAGAAGAGCAAATCCGGAGGGGAGGATTTTGAGGAGGACGAACCAGAGGCTAAGAGATGGCGAAGGGAAGGTGACAACAATGAAGGGATATCCGCAGCCGGTAGCCGGACCGTGAGAGAGCCGAGAGTCGTGGTCCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGCCAGAAAGTGGTGAAGGGCAACCCAAATCCAAGGTGA 1290 52.09 MASSSGSLDTSANSHPTFTFSTHPFMTSSYSDLLSSDLPSSAIPLRPSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHALPSPTTGSFPSQSLNWKSNLGFNHYNQQSIKEENKFLSNFSFQTQSSKLPPTSFQPSSTVAPPTQGWSFLEQGKKQDGFLTEKNMVKPEFGSMQSFSPDYGVVQNQSQNNGGGELQPDYSNNYPQQSQTLNRKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHSMAASNPAANDMGDQSFTTQGSGQYDGVATPENSSISIGDEDFDRSSQKSKSGGEDFEEDEPEAKRWRREGDNNEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 49997133 50000352 - Hsped.10g13680.1 Hepe10g1368 581915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1368 429 SMART WRKY_cls 233 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 158 429 IPR044810 GO:0003700(InterPro)
Hepe10g1368 429 MobiDBLite consensus disorder prediction 195 238 - -
Hepe10g1368 429 Gene3D WRKY domain 395 429 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 FunFam WRKY transcription factor 224 293 - -
Hepe10g1368 429 MobiDBLite consensus disorder prediction 41 66 - -
Hepe10g1368 429 Pfam WRKY DNA -binding domain 409 429 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 SUPERFAMILY WRKY DNA-binding domain 232 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 MobiDBLite consensus disorder prediction 196 233 - -
Hepe10g1368 429 MobiDBLite consensus disorder prediction 345 380 - -
Hepe10g1368 429 Gene3D WRKY domain 219 293 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 MobiDBLite consensus disorder prediction 288 344 - -
Hepe10g1368 429 MobiDBLite consensus disorder prediction 283 395 - -
Hepe10g1368 429 ProSiteProfiles WRKY domain profile. 403 429 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 SUPERFAMILY WRKY DNA-binding domain 400 429 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1368 429 ProSiteProfiles WRKY domain profile. 234 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1368 Hepe-Chr10:49997133 Hepe10g1775 Hepe-Chr10:54519892 1.17e-50 dispersed
Hepe10g1368 Hepe-Chr10:49997133 Hepe05g0048 Hepe-Chr5:521195 1.59e-55 wgd
Hepe10g1368 Hepe-Chr10:49997133 Hepe08g0694 Hepe-Chr8:6248899 2.39e-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56519 PF03106 WRKY 1.10E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1368 K13424 - csv:101207158 721.85