Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1374 ATGGGTAAAATAACGTATGGTCGTTTAAACTTGGAGATCTACGACTGCGCTGAAGGCGACGTTAAGTTGAAAGGCGGACTTTTGAGCCCAGAAGATGACGAGGTGGAGATGACGGTGAGAGTGAGGCAGGGGAAGTGTGCTCTGTTCTTCTTCTCCATGCCTTCCACAGTTCTCCAATGGCTGAGCCTCGTCGGAATCATATGGCTTCAATCCATCAATGGCACCAACTTCAACTTCCCCTCTTATTCATCTCAACTCAAACACCAACTTTCCATCTCCCAATTGCAACTCAACAACCTCGCTTTCGCCTCCGACGCCGGCAAGCTTTTCGGTTGGTTCTCCGGCCTCGCTGCTAACTATTTACCTCTTTGGTTGGTTCTCATCATTGGTTCTTCTCTCGGACTTCTCGGCTATGGCTTACAATATCTCTTCATTACCAACCAATTACACTCTCCTTCTTATTGGGTCATTTTCTTCCTCACCGTCGTCGCCGGAAACAGCATCTGTTGGATCAACACCGTCTGCTACACCGTCGCCATTAGAAATTTCTCGTCCTCGAATCGACAAGTTGCTGTCGGGATATCGACTAGCTACCAAGGATTAAGCGCCAAGATCTATACGGATATCGTCGAGTCAATGTTTTCTAAAGGGTCTTCCAAAACAGCACAAACATTTCTTCTTTTGAACTCTGTTTTGCCTTTGGGTGTTTGTGTTTTGGCGTCTCCATTGGCTAGAGTTCTTAAATTGGTTGAAGAACAGGGGAATTTGGAAGCTGGGTTTGTTGTGATCTTTGTGATAACCATAGCCACTGGGGTTTTTGCTGTGGTTACAAGCGTCGGTTCGATATCGACAACGTTGTCACCATTGAAGGGGCTGGTTGGGATTTTAGTGTTTCTGCTCCTCCCGCTGGTGGTTGCAGTTGCAGAGAATGTGAAAGAGAGAGTAAAAGAACGAAAAGAGAGAAGGGTTTATCATTTTACAGTTGAAGATCATCAGAAAAGTGAAGTAGATCAGAGAATTGATGAAGATGTAGAGAGAATTAGGCCCAAAAATGAGGCAGAATTGGAGGCAATGGAGGAGATTGGAGCGAAAGAGATGTTGAAACGAATTAACTTTTGGTTATATTTTAGTGTTTATTTTTTTGGTGCAACACTTGGTTTGGTGTTCTTAAACAACTTGGGCCAAATTGCGGAGTCTCGTCGAAGCTCGAGTGTTTCGTCGTTGGTATCTTTGTCGTCCTCCTTCAGCTTCTTCGGCCGCCTCATCCCCTCCCTTCTCGACCATTTCTTCTCCAGAAGGAAGTACATGAAATCAAAGCCAGGTTGGATAGTGGCGTTGATGGGGGCAATGTGTGGAGGTTTTTTTCTTCTGTCATGTCCGACCAATATGAGTCTATGTGTGAGCACAGCCATAATCGCAATGTGTACAGGCGCAATCACTTCAATCTCTGTCTCCACAACCACCGAGTTATTTGGAGCCAACAATTTCTCCATAAACCATAACGTCGTCGTTGCCAACATACCTTTTGGTTCGTTTCTTTTCGGCTATATGGCCGGTTTCCTTTACCACAAGAAAGCTCCGGCCACCGGAAAATGCATCGGAGTTGACTGTTACAGAACCACTTTTTTGATATGGGGTTGCTTTTGTTCCTTTGGGACTTTGCTAGCTTTGCTTTTGTTCGCTCGAACCAGAACCTTCTACTCTACAAAATCACAGATACTGGAAGATTCTACGTAG 1737 45.14 MGKITYGRLNLEIYDCAEGDVKLKGGLLSPEDDEVEMTVRVRQGKCALFFFSMPSTVLQWLSLVGIIWLQSINGTNFNFPSYSSQLKHQLSISQLQLNNLAFASDAGKLFGWFSGLAANYLPLWLVLIIGSSLGLLGYGLQYLFITNQLHSPSYWVIFFLTVVAGNSICWINTVCYTVAIRNFSSSNRQVAVGISTSYQGLSAKIYTDIVESMFSKGSSKTAQTFLLLNSVLPLGVCVLASPLARVLKLVEEQGNLEAGFVVIFVITIATGVFAVVTSVGSISTTLSPLKGLVGILVFLLLPLVVAVAENVKERVKERKERRVYHFTVEDHQKSEVDQRIDEDVERIRPKNEAELEAMEEIGAKEMLKRINFWLYFSVYFFGATLGLVFLNNLGQIAESRRSSSVSSLVSLSSSFSFFGRLIPSLLDHFFSRRKYMKSKPGWIVALMGAMCGGFFLLSCPTNMSLCVSTAIIAMCTGAITSISVSTTTELFGANNFSINHNVVVANIPFGSFLFGYMAGFLYHKKAPATGKCIGVDCYRTTFLIWGCFCSFGTLLALLLFARTRTFYSTKSQILEDST 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 50072324 50076915 + Hsped.10g13740.1 Hepe10g1374 581921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1374 578 SUPERFAMILY MFS general substrate transporter 55 242 IPR036259 -
Hepe10g1374 578 SUPERFAMILY MFS general substrate transporter 269 564 IPR036259 -
Hepe10g1374 578 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 59 569 - GO:0016020(PANTHER)
Hepe10g1374 578 CDD UDM1_RNF168_RNF169-like 312 366 - -
Hepe10g1374 578 Gene3D MFS general substrate transporter like domains 250 564 IPR036259 -
Hepe10g1374 578 Pfam Nodulin-like 59 306 IPR010658 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1374 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0001 Hepe-Chr7:7184 Hepe10g1374 Hepe-Chr10:50072324 1.56e-80 dispersed
Hepe07g0850 Hepe-Chr7:10692549 Hepe10g1374 Hepe-Chr10:50072324 2.85e-62 dispersed
Hepe10g1374 Hepe-Chr10:50072324 Hepe08g0281 Hepe-Chr8:2535787 8.13e-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g141 . Blo15g00373 Bda06g00482 . Bpe07g00721 . . Bma12g00928 . Cmo11g01732 Cma02g00243 Cma20g00761 . Car20g00663 . Cpe04g00583 . Bhi05g01728 . . . Hepe02g0432 . . Cla02g00435 Cam02g0444 Cec02g0442 Cco02g0460 Clacu02g0446 Cmu02g0440 Cre02g0774 . . . . Lsi10g00482 Csa07g00091 Chy11g00271 Cme01g01273 . . . . . . . . . Cmo02g00245 Cmo20g00758 . . . . Cpe16g00309 Cpe05g01382 Bhi10g01865 Tan05g1158 . . Hepe10g1374 . . Cla02g01155 Cam02g1231 Cec02g1240 Cco02g1280 Clacu02g1212 Cmu02g1181 Cre02g1490 Lsi11g01194 Csa02g01375 Chy01g00687 Cme11g00393
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008480 1 1 0 0 1 1 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 0 1 33