Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1430 ATGTGGGATCTCAATGATTCTCCCGATCATGGCGGAACGGATGAATTTGAGGGGTTTTCCTCGATTGACGGCGATGACGACAGAGCCAAATGGGTAGGATCCATTCATTCCAACTCCAGCTCTTCGGCGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCCAGCGCCGGCGAGGGCGAACCATTACTCCACCGGAATAACTTCTCGGTGAACCCCCCGCCGGCGACTCGGCAGTTCTTCCCCATGGAAGATTCCGACATGGGGGCTTCATCGGTCGGCGGCGGTGGTGGTGGTGGTGGTGGTTCTACTGCGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACGGAGCCTGTCGCCGCCGTGAGACCGGTGGCGATTCTGCAGCCAATAAAGAAAAGCCGGCGAGGACCGAGGTCTCGGAGCTCTCAATATCGCGGCGTCACGTTCTACCGGCGAACCGGCCGGTGGGAATCTCACATTTGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGACACTGCTCATTCAGCTGCTCGAGCCTATGACAGGGCGGCTATAAAGTTTAGAGGAACAGAAGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGGAATTTGACCAAGGAAGAATTTGTACATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAAGCTCAAAATTTCGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGAGCCGAATGGGGCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGGTTGAAGCTGCGAGAGCTTATGACAAAGCTGCAATCAAGTGTAATGGAAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGAATGAGCTTAGTACAACAGAATCATCATCATCAGGCAATGTCTTGGAACAGAATCTTGATTTGAGGTTAGGTAATTCAAGCTCAAAACTAAACACCCTTACAGTTGGGAATCATTGCTCAAATGTCACCAAAAATATTGATTTGCAAAATAGGGAATCTAATCCTCAGGAATCAAATATATATGAGAATGATACTGGTAGAAGATACACGTTCCTTCAGACAGAGAAAAGGCAGTTGCCTAGAGAAACGATGGTTCGATCTCCACCCTCCATTGAAACAACGATACATGGGCGCTTGGAGAGATCTGTTGAATTGCAGACTCTTCACAATTACTCTCCACACATCAATCAATCAAACTCTCAAGTAAGATTTTGGTACTTTTGA 1287 48.1 MWDLNDSPDHGGTDEFEGFSSIDGDDDRAKWVGSIHSNSSSSAVVMEDGSDADEASAGEGEPLLHRNNFSVNPPPATRQFFPMEDSDMGASSVGGGGGGGGGSTAFPRARWVGVKFCQTEPVAAVRPVAILQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWESRMGQFLGKKYVYLGLFDSEVEAARAYDKAAIKCNGKEAVTNFDPSIYENELSTTESSSSGNVLEQNLDLRLGNSSSKLNTLTVGNHCSNVTKNIDLQNRESNPQESNIYENDTGRRYTFLQTEKRQLPRETMVRSPPSIETTIHGRLERSVELQTLHNYSPHINQSNSQVRFWYF 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 50968401 50971896 + Hsped.10g14300.1 Hepe10g1430 581977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1430 428 FunFam AP2-like ethylene-responsive transcription factor 238 298 - -
Hepe10g1430 428 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 FunFam AP2-like ethylene-responsive transcription factor 146 205 - -
Hepe10g1430 428 CDD AP2 238 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 SMART rav1_2 147 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 SMART rav1_2 239 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 ProSiteProfiles AP2/ERF domain profile. 147 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 Gene3D AP2/ERF domain 146 205 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 Gene3D AP2/ERF domain 238 297 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 349 - -
Hepe10g1430 428 CDD AP2 147 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 MobiDBLite consensus disorder prediction 1 74 - -
Hepe10g1430 428 SUPERFAMILY DNA-binding domain 238 298 IPR016177 GO:0003677(InterPro)
Hepe10g1430 428 Pfam AP2 domain 147 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 Pfam AP2 domain 238 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe10g1430 428 SUPERFAMILY DNA-binding domain 146 204 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0230 Hepe-Chr5:2708197 Hepe10g1430 Hepe-Chr10:50968401 2.28e-104 dispersed
Hepe08g0848 Hepe-Chr8:7688552 Hepe10g1430 Hepe-Chr10:50968401 1.25e-110 dispersed
Hepe09g0546 Hepe-Chr9:5155113 Hepe10g1430 Hepe-Chr10:50968401 3.98e-42 dispersed
Hepe10g1430 Hepe-Chr10:50968401 Hepe02g0583 Hepe-Chr2:5908045 8.29e-10 dispersed
Hepe04g1257 Hepe-Chr4:68074587 Hepe10g1430 Hepe-Chr10:50968401 3.26e-142 transposed
Hepe10g1430 Hepe-Chr10:50968401 Hepe04g1342 Hepe-Chr4:69024398 9.25e-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56526 PF00847 AP2 2.50E-08 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1430 K09284 - csv:101208665 687.567