Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1486 ATGGAAATTACAGATATGCAGCAAAGCAGCAAGCAGCAGCAGCAACATAACAACAACAACTCCAACTCCAACTCCAACTCCGCCCCGCCTCATCTCCTCCATCATCACCACCACCACCACCACCATAAGCATCCTTCTTCTCAATCTCCATCTTCTCAGCAGCAAATTCATGTGGTCCCTTTTGATGGCAGATCATCAGCAGCAGGTGCAGCTGCAGGATCAGGAGGATCAGGAGGAGGAGGTCCACCCAGCTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCTTCCTTCCTCTTCTTCTTCCAATTCTTCTTCAACTTCATCGCCTTCCTCCGCTTCCGCTTCCGCCGACACCACCACCACCACCACCACCAACCCTTCTCCCCGATCCAACTCCATCTCCACCGCCGCCCTCAAACGCTCCACCAAAGACCGCCACACCAAAGTCGACGGTCGCGGCCGCCGCATCCGTATGCCTGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACTAGAGAATTGGGTCACAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAACAAGCCGAACCTGCTATCATCGCCGCCACTGGCACTGGTACAATCCCTGCCAATTTCTCCTCCTTGAATATCTCCATTCGCAGCAGTGGATCCACTCTCTCCGCCCCTCCCTCCAAATCCGCCGCCCATTCCTTTCATGGCGCCTTGGCTCTCGCTCACCATCCTCATGTCTACGAGGAAGGATTCGCACATGCTGCTTTGCTAGGATTTCATCAACATCAACATCAACAACAACTGAATCTAATGACGGCCGATCAAATAGCGGAGGCTCTCCCCAGCGGTGGCGGAGAGAGCGGTAGCGGTGGAGGAGACTCGACCGATAACTACATGAGAAAACGCTTCAGAGAGGATCTGTTTAAAGAGGATACACAATCTCAAGGGGAGAGCAGCGGATCTCCCAAAGCAATCAAGACCGATCCGCAATCAGTGAAGCAGCAATCAGTGGCGTCGACGGGGCAACTCCGTCCAGCGGCAGCGATGTGGGCGATGGCTCCGGCAGCGAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTAACGGCAGGTTCCGGCGGAGGAAATGTGGCGAGTTCCGGGGCAGGAGAAGCTCAGATGTGGCCATTCTCGACGACCGCAAACACATTGCAAGCGCCATTACATTTCATGCCAAGATTCAACATCCCAGCTGCAACCGCAAGTGAATTTCAAGGAGGAGGAAGAGCAAGCCAATTGCAACTTGGTTCCATGTTAATGCAACAACAGCAACAACAACAACAACCGAGTCAGCATCTTGGGCTCGGAGTAACCGAATCAAATTTGGGGGTATTGGCCGCTCTAAATGCGTATTCGAGAGGCGGTTTTAATATGAATTCAGATCAGCATCAGCATCAACATCAGCATCAACATTATCATCCCGGTAATCAACCTCACACTACTACTACTACTGATAGCGGGGATGAAGCTGATCCAAACACTTCTCAATGA 1533 53.03 MEITDMQQSSKQQQQHNNNNSNSNSNSAPPHLLHHHHHHHHHKHPSSQSPSSQQQIHVVPFDGRSSAAGAAAGSGGSGGGGPPSFMGSISTLVSLPLPSSSSSNSSSTSSPSSASASADTTTTTTTNPSPRSNSISTAALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAAHSFHGALALAHHPHVYEEGFAHAALLGFHQHQHQQQLNLMTADQIAEALPSGGGESGSGGGDSTDNYMRKRFREDLFKEDTQSQGESSGSPKAIKTDPQSVKQQSVASTGQLRPAAAMWAMAPAASSGASNTFWMLPVTAGSGGGNVASSGAGEAQMWPFSTTANTLQAPLHFMPRFNIPAATASEFQGGGRASQLQLGSMLMQQQQQQQQPSQHLGLGVTESNLGVLAALNAYSRGGFNMNSDQHQHQHQHQHYHPGNQPHTTTTTDSGDEADPNTSQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 51695896 51697921 - Hsped.10g14860.1 Hepe10g1486 582033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1486 510 MobiDBLite consensus disorder prediction 87 140 - -
Hepe10g1486 510 Pfam TCP family transcription factor 143 260 IPR017887 -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 313 339 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 1 157 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 485 510 - -
Hepe10g1486 510 ProSiteProfiles TCP domain profile. 144 198 IPR017887 -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 141 157 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 470 510 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 31 46 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 309 339 - -
Hepe10g1486 510 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 474 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe10g1486 510 MobiDBLite consensus disorder prediction 1 30 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2519 Hepe-Chr7:69524841 Hepe10g1486 Hepe-Chr10:51695896 1.59e-38 dispersed
Hepe09g0125 Hepe-Chr9:998999 Hepe10g1486 Hepe-Chr10:51695896 2.84e-41 dispersed
Hepe10g1486 Hepe-Chr10:51695896 Hepe10g1732 Hepe-Chr10:54154477 2.03e-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56530 PF03634 TCP 3.20E-38 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1486 - - - 0.0