Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1486 ATGGAAATTACAGATATGCAGCAAAGCAGCAAGCAGCAGCAGCAACATAACAACAACAACTCCAACTCCAACTCCAACTCCGCCCCGCCTCATCTCCTCCATCATCACCACCACCACCACCACCATAAGCATCCTTCTTCTCAATCTCCATCTTCTCAGCAGCAAATTCATGTGGTCCCTTTTGATGGCAGATCATCAGCAGCAGGTGCAGCTGCAGGATCAGGAGGATCAGGAGGAGGAGGTCCACCCAGCTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCTTCCTTCCTCTTCTTCTTCCAATTCTTCTTCAACTTCATCGCCTTCCTCCGCTTCCGCTTCCGCCGACACCACCACCACCACCACCACCAACCCTTCTCCCCGATCCAACTCCATCTCCACCGCCGCCCTCAAACGCTCCACCAAAGACCGCCACACCAAAGTCGACGGTCGCGGCCGCCGCATCCGTATGCCTGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACTAGAGAATTGGGTCACAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAACAAGCCGAACCTGCTATCATCGCCGCCACTGGCACTGGTACAATCCCTGCCAATTTCTCCTCCTTGAATATCTCCATTCGCAGCAGTGGATCCACTCTCTCCGCCCCTCCCTCCAAATCCGCCGCCCATTCCTTTCATGGCGCCTTGGCTCTCGCTCACCATCCTCATGTCTACGAGGAAGGATTCGCACATGCTGCTTTGCTAGGATTTCATCAACATCAACATCAACAACAACTGAATCTAATGACGGCCGATCAAATAGCGGAGGCTCTCCCCAGCGGTGGCGGAGAGAGCGGTAGCGGTGGAGGAGACTCGACCGATAACTACATGAGAAAACGCTTCAGAGAGGATCTGTTTAAAGAGGATACACAATCTCAAGGGGAGAGCAGCGGATCTCCCAAAGCAATCAAGACCGATCCGCAATCAGTGAAGCAGCAATCAGTGGCGTCGACGGGGCAACTCCGTCCAGCGGCAGCGATGTGGGCGATGGCTCCGGCAGCGAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTAACGGCAGGTTCCGGCGGAGGAAATGTGGCGAGTTCCGGGGCAGGAGAAGCTCAGATGTGGCCATTCTCGACGACCGCAAACACATTGCAAGCGCCATTACATTTCATGCCAAGATTCAACATCCCAGCTGCAACCGCAAGTGAATTTCAAGGAGGAGGAAGAGCAAGCCAATTGCAACTTGGTTCCATGTTAATGCAACAACAGCAACAACAACAACAACCGAGTCAGCATCTTGGGCTCGGAGTAACCGAATCAAATTTGGGGGTATTGGCCGCTCTAAATGCGTATTCGAGAGGCGGTTTTAATATGAATTCAGATCAGCATCAGCATCAACATCAGCATCAACATTATCATCCCGGTAATCAACCTCACACTACTACTACTACTGATAGCGGGGATGAAGCTGATCCAAACACTTCTCAATGA 1533 53.03 MEITDMQQSSKQQQQHNNNNSNSNSNSAPPHLLHHHHHHHHHKHPSSQSPSSQQQIHVVPFDGRSSAAGAAAGSGGSGGGGPPSFMGSISTLVSLPLPSSSSSNSSSTSSPSSASASADTTTTTTTNPSPRSNSISTAALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAAHSFHGALALAHHPHVYEEGFAHAALLGFHQHQHQQQLNLMTADQIAEALPSGGGESGSGGGDSTDNYMRKRFREDLFKEDTQSQGESSGSPKAIKTDPQSVKQQSVASTGQLRPAAAMWAMAPAASSGASNTFWMLPVTAGSGGGNVASSGAGEAQMWPFSTTANTLQAPLHFMPRFNIPAATASEFQGGGRASQLQLGSMLMQQQQQQQQPSQHLGLGVTESNLGVLAALNAYSRGGFNMNSDQHQHQHQHQHYHPGNQPHTTTTTDSGDEADPNTSQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 51695896 51697921 - Hsped.10g14860.1 Hepe10g1486 582033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1486 510 MobiDBLite consensus disorder prediction 87 140 - -
Hepe10g1486 510 Pfam TCP family transcription factor 143 260 IPR017887 -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 313 339 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 1 157 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 485 510 - -
Hepe10g1486 510 ProSiteProfiles TCP domain profile. 144 198 IPR017887 -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 141 157 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 470 510 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 31 46 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 309 339 - -
Hepe10g1486 510 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 474 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe10g1486 510 MobiDBLite consensus disorder prediction 1 30 - -
Hepe10g1486 510 MobiDBLite consensus disorder prediction 279 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1486 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2519 Hepe-Chr7:69524841 Hepe10g1486 Hepe-Chr10:51695896 1.59e-38 dispersed
Hepe09g0125 Hepe-Chr9:998999 Hepe10g1486 Hepe-Chr10:51695896 2.84e-41 dispersed
Hepe10g1486 Hepe-Chr10:51695896 Hepe10g1732 Hepe-Chr10:54154477 2.03e-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2449 . 39 245 TCP Transcription Factor Family AT5G23280 65.2 1.6e-67 253.1
Hepe01g0906 . 114 332 TCP Transcription Factor Family AT5G23280 58.9 2.5e-60 229.2
Hepe03g0481 . 1 330 TCP Transcription Factor Family AT2G45680 50.1 5.0e-70 261.9
Hepe09g0125 . 35 174 TCP Transcription Factor Family AT3G47620 63.0 1.6e-42 171.0
Hepe07g2519 . 103 204 TCP Transcription Factor Family AT3G47620 82.4 3.7e-39 159.8
Hepe10g1486 . 143 234 TCP Transcription Factor Family AT3G47620 84.9 5.9e-37 152.5
Hepe09g0125 . 90 172 TCP Transcription Factor Family AT1G69690 95.2 1.0e-37 154.5
Hepe02g1690 . 42 305 TCP Transcription Factor Family AT3G27010 56.4 8.3e-61 231.1
Hepe03g1140 . 29 261 TCP Transcription Factor Family AT3G27010 52.6 3.7e-53 205.7
Hepe02g2449 . 9 244 TCP Transcription Factor Family AT5G08330 57.7 6.6e-66 247.7
Hepe01g0906 . 114 330 TCP Transcription Factor Family AT5G08330 57.9 6.1e-56 214.5
Hepe09g0277 . 29 123 TCP Transcription Factor Family AT5G60970 78.1 1.1e-37 154.5
Hepe02g0930 . 37 149 TCP Transcription Factor Family AT3G02150 67.5 7.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56530 PF03634 TCP 3.20E-38 No_clan Hepe TF