Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1487 ATGGAGTCTCACTTTAATCACCATCTATTCGACAGGCGACCCATTGTGAAGAACAAGACTCCTGCTGTCAAATGGATCAGAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTATGAAATGGGTTACAGAGGATACATTGAAGGCTTTAAAGGAGAAGACAAAACAGACAGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGGAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGACAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGACTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCGCATATGAAAACACATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCCCACGAATACAAATTGAAGAACCACATTACCTCTCACCATGAAAAGGTAACAACTTGTAATGTGACACCTGAAGTGGTCAAATATACACCACCTCCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCGGCGTCATCAGATCGTCCATATGCCTGCCCCTATGAAGGGTGTGAGAAGGCTTACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAACGGCAATGCTGCACACAATGGGGAAAATGAGATAGAAGCCAGTGATCAAGATGGCTATGGCGGAAAACGGGTAAATACAAAAAACCAGAAACAGAATAAGCCCAAACCGAACTTGAAGTTACCGCCTTCAAAAATATCACATCGAAAAGGCACAACTCCGTCTCCTGCACCAATGAGTGCAGTTAAAAAATCATGGCCGGTTAAGGAAGAAAACTACGAGGAAGAAGATAGTGAAGAAACGGAGGAGGAGGACCGTGAGAATGTGGAGGACGGTTGGAGATATGCTGAAAACGAAGATGATGATGATGAGGAAACAGAGTATGAAGATTAA 1128 42.91 MESHFNHHLFDRRPIVKNKTPAVKWIREWVPQDVVATGGKCFLMKWVTEDTLKALKEKTKQTEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKVTTCNVTPEVVKYTPPPEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAAHNGENEIEASDQDGYGGKRVNTKNQKQNKPKPNLKLPPSKISHRKGTTPSPAPMSAVKKSWPVKEENYEEEDSEETEEEDRENVEDGWRYAENEDDDDEETEYED 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 51717627 51722084 + Hsped.10g14870.1 Hepe10g1487 582034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1487 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Hepe10g1487 375 FunFam zinc finger transcription factor YY1 163 194 - -
Hepe10g1487 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Hepe10g1487 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Hepe10g1487 375 MobiDBLite consensus disorder prediction 287 302 - -
Hepe10g1487 375 FunFam Putative zinc finger protein 143 103 133 - -
Hepe10g1487 375 SUPERFAMILY beta-beta-alpha zinc fingers 160 192 IPR036236 -
Hepe10g1487 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Hepe10g1487 375 FunFam Zinc finger protein 410 134 161 - -
Hepe10g1487 375 SUPERFAMILY beta-beta-alpha zinc fingers 228 256 IPR036236 -
Hepe10g1487 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Hepe10g1487 375 FunFam zinc finger transcription factor YY1 77 102 - -
Hepe10g1487 375 MobiDBLite consensus disorder prediction 337 352 - -
Hepe10g1487 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Hepe10g1487 375 Gene3D Classic Zinc Finger 77 102 - -
Hepe10g1487 375 Gene3D Classic Zinc Finger 134 161 - -
Hepe10g1487 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 19 355 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Hepe10g1487 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Hepe10g1487 375 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Hepe10g1487 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Hepe10g1487 375 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Hepe10g1487 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Hepe10g1487 375 FunFam Zinc finger transcription factor YY1 208 275 - -
Hepe10g1487 375 ProSitePatterns Zinc finger C2H2 type domain signature. 235 258 IPR013087 -
Hepe10g1487 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Hepe10g1487 375 MobiDBLite consensus disorder prediction 205 231 - -
Hepe10g1487 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Hepe10g1487 375 Gene3D Classic Zinc Finger 162 191 - -
Hepe10g1487 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Hepe10g1487 375 MobiDBLite consensus disorder prediction 261 375 - -
Hepe10g1487 375 MobiDBLite consensus disorder prediction 359 375 - -
Hepe10g1487 375 Gene3D Classic Zinc Finger 210 276 - -
Hepe10g1487 375 SMART c2h2final6 136 160 IPR013087 -
Hepe10g1487 375 SMART c2h2final6 233 258 IPR013087 -
Hepe10g1487 375 SMART c2h2final6 77 101 IPR013087 -
Hepe10g1487 375 SMART c2h2final6 166 190 IPR013087 -
Hepe10g1487 375 SMART c2h2final6 106 130 IPR013087 -
Hepe10g1487 375 Gene3D Classic Zinc Finger 103 133 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56531 PF00096 zf-C2H2 0.005 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1487 - - - 0.0