Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1531 ATGGAGGGAAATGTAAAGGCGAAAAGCATAGCTGGTGATGGAAGATGTTTGTTTCGATCAGTGGTTCATGGTGCTTGTCTCAGATCGGGCAAGCCAGCTCCAAGCGAGGTTCTCCAAAAAGAGCTTGCAGACGAGCTCAGAGAGAACGTTGCAAATGAGTTGATGAAGAGGCGTTTGGACACCGAACGGTTTATTGAAGGTGACTTCGGCCAGTATGTTGGACACATGCGCCAACCACACGTGTGGGGAGGAGAACCTGAGTTACTTATGTCTTCACATGTCCTACAGATGCCAATCTCAGTGTACATGTGGGACAAGAACTCGGCAAATCTTAAGGTCATAGCTGAGTATGGGCAGGAGGAGTACGCTGCGGGAGTGACGAAGAGAATGAAGCTCACTCCAAAGGAGGTGGACAAATTAGCTCTGCATAATGCGGGATTTCTAGCACAGAAGCGTCTTGCTCGCGGTTTGAGGCTCAATTACACTGAAGCTGTAGCACTTATTGCCACACAGATTCTGGAGTTTGCTCGCAATGGTGATAAGAGCGTGGCACAATTGATGGAATTGGGGCCAAAATTCTTAGGAAGGAGACAAGTTCTTCCAGCTGTTCCACATCTTGTGGATTCTGTGCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAGTCACAGTTCATAAGCCCTTTGAAGAAGAAAATGGGAACCTAGAGCTAGCATTGCACGGTTCTTTTCTTCCAGTTCCTTCGCTAGAAAAGTTCCCTTTGATGGAAAATAGTGCGGTGCCTGGCGAGATTGTTTGTCCAGATGATAAGATTGCTATTAATGTTGGACGGAAAGCTGTAAGACTTGGTGTGGTCAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGGTGAATCCTTCCTTAGTTTTTGATCGATCAAAAGCTTATGGCATGCGCCTCAACATATCAGCAGGATCAGCTACACGATTTGAGCCAGGGGACTATAAATCTGTCACACTTGTAGCAATTGGTGGTAACCAAGTTATCAGAGGGGGAAATGGCATTGCCGATGGTCCAGTTGATAGTTCTAAATTGAAAGAAGTGATGGAAGCTGTGCATGCAAGAGGATTTGGACATTTGGAAGAAAACAATGCTAGTGAAGGTGTCACTGAAGCGGATGGTGAATTAACCACCAGACTTTCTCGTGAGGATTATGCCAACCGGTATGGTCCTACCACTGGCGACAAAGTTCGACTTGGTGATACAGATTTATATGCTGAAATCGAACATGATTTCTCTGTTTATGGAGACGAGTGTGTATTTGGAGGTGGAAAGGTTATTAGAGAGGGGATGGGCCAGTCCTGCGGGCATCCACCAGCTTTATCCCTTGATACTGTAATAACCAATGCAGTTGTCATTGACTACTGCGGAATTTTCAAGACAGATATTGGTATCAAAGATGGCTTCATTATGACCCTCGGAAAAGCTGGCAATCCTGATGTCATGGATGGTGTTTGTCCTGATCTGATTATTGGGGCTAATACTGAGGTTATTGCTGGAGAAGGATTAGTGGTTACTGCAGGGGCTATAGATTGTCATGTGCACTTCATATGCCCTCAACTGGCATATGAAGCAATATCAAGCGGCGTCACAACGCTGGTGGGAGGTGGAACTGGGCCAGCCGAAGGAACTTGTGCTACTACTTGCACACCATCCCCAGTGCAGATGAGGATGATGCTGCAAGCAACTGATGACCTGCCCTTGAATTTTGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGACGAGCTACATGAAATAGTAAGGGCTGGAGCAATGGGGCTGAAGCTACATGAAGACTGGGGAACTACTCCTGCTGCAATTGACAATTGTTTAACTGTGGCAGAAAAATATGACATTCAGGTGAATATTCACACTGACACGTTGAATGAATCTGGATTTGTGGAACATACGATTGCAGCTTTTAAGGGAAGAACCATACACACATACCACAGTGAAGGAGCTGGAGGTGGTCATGCTCCAGATATCATTCGAGTGTGTGGTGTGAAAAATGTGCTGCCTTCATCAACTAATCCTACACGACCATTCACGATCAACACTGTAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTCGATCACAATATTAAAGAAGACGTTGCTTTTGCCGAATCAAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATATGGGGGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGTCGCATAGGAGAGGTGATTACAAGAACGTGGCAAACTGCACACAAAATGAAGTTGGAAAGATCGCCTACATCAGACAACGACAACTTGCGGATCAAGCGATACATATCCAAATATACCATAAATCCAGCCATAGCAAACGGGTTTTCTCAGTATGTTGGATCAGTAGAGGTAGGGAAGTTGGCTGATCTTGTTCTCTGGAACCCAGCCTTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGGTGGTATAATTGCATGGGCAAACATGGGTGATCCAAATGCAAGCATTCCTACTCCTCAACCGGTACTGATGAGGCCAATGTTTGGGTCCTTTGGAAAGGCTGGAAGTGCCAACTCAATTGTCTTTGTCAGCAAGGCAGCTGTTAACGCCGGAGTTAAAGCCATGTACGGACTCGAAAAGAGAGTTGAAGCTGTGGGAAATGTAAGGAATCTCACTAAACTTGACATGATGTGGAATGACGCCCTTCCAATCATCGAAGTAGATCCCGAAACATACATAGTGAAAGCTGATGGCGAAGTTCTTACCTGCCAGCCCGCCACTTCTGTTCCACTTTCTCGAAATTACTTCCTTTTCTAG 2889 45.31 MEGNVKAKSIAGDGRCLFRSVVHGACLRSGKPAPSEVLQKELADELRENVANELMKRRLDTERFIEGDFGQYVGHMRQPHVWGGEPELLMSSHVLQMPISVYMWDKNSANLKVIAEYGQEEYAAGVTKRMKLTPKEVDKLALHNAGFLAQKRLARGLRLNYTEAVALIATQILEFARNGDKSVAQLMELGPKFLGRRQVLPAVPHLVDSVQVEGTFPDGTKLVTVHKPFEEENGNLELALHGSFLPVPSLEKFPLMENSAVPGEIVCPDDKIAINVGRKAVRLGVVNKGDRPIQVGSHYHFIEVNPSLVFDRSKAYGMRLNISAGSATRFEPGDYKSVTLVAIGGNQVIRGGNGIADGPVDSSKLKEVMEAVHARGFGHLEENNASEGVTEADGELTTRLSREDYANRYGPTTGDKVRLGDTDLYAEIEHDFSVYGDECVFGGGKVIREGMGQSCGHPPALSLDTVITNAVVIDYCGIFKTDIGIKDGFIMTLGKAGNPDVMDGVCPDLIIGANTEVIAGEGLVVTAGAIDCHVHFICPQLAYEAISSGVTTLVGGGTGPAEGTCATTCTPSPVQMRMMLQATDDLPLNFGFTGKGNSSKPDELHEIVRAGAMGLKLHEDWGTTPAAIDNCLTVAEKYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCGVKNVLPSSTNPTRPFTINTVDEHLDMLMVCHHLDHNIKEDVAFAESRIRKETIAAEDILHDMGAISIISSDSQAMGRIGEVITRTWQTAHKMKLERSPTSDNDNLRIKRYISKYTINPAIANGFSQYVGSVEVGKLADLVLWNPAFFGAKPEKVIKGGIIAWANMGDPNASIPTPQPVLMRPMFGSFGKAGSANSIVFVSKAAVNAGVKAMYGLEKRVEAVGNVRNLTKLDMMWNDALPIIEVDPETYIVKADGEVLTCQPATSVPLSRNYFLF 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52051005 52067371 + Hsped.10g15310.1 Hepe10g1531 582078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1531 962 Hamap Urease subunit alpha [ureC]. 398 962 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 FunFam Urease subunit alpha 133 253 - -
Hepe10g1531 962 ProSitePatterns Urease nickel ligands signature. 526 539 IPR029754 GO:0016151(InterPro)
Hepe10g1531 962 Pfam Urease alpha-subunit, N-terminal domain 399 518 IPR011612 -
Hepe10g1531 962 PANTHER UREASE 130 962 IPR050069 -
Hepe10g1531 962 SUPERFAMILY Composite domain of metallo-dependent hydrolases 399 577 IPR011059 GO:0016810(InterPro)
Hepe10g1531 962 Pfam OTU-like cysteine protease 12 118 IPR003323 -
Hepe10g1531 962 ProSiteProfiles Urease domain profile. 528 962 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 Pfam Urease, gamma subunit 130 228 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 SUPERFAMILY Composite domain of metallo-dependent hydrolases 804 874 IPR011059 GO:0016810(InterPro)
Hepe10g1531 962 Gene3D - 528 962 - -
Hepe10g1531 962 CDD Urease_beta 261 360 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 NCBIfam urease subunit gamma 130 230 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 Hamap Urease subunit beta [ureB]. 260 360 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 NCBIfam urease subunit beta 261 361 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 SUPERFAMILY Urease, gamma-subunit 130 233 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 CDD OTU_plant_OTU4-like 10 123 IPR047947 -
Hepe10g1531 962 Pfam Urease beta subunit 262 358 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 PRINTS Urea amidohydrolase (urease) protein signature 694 711 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 PRINTS Urea amidohydrolase (urease) protein signature 796 811 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 PRINTS Urea amidohydrolase (urease) protein signature 733 749 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 PRINTS Urea amidohydrolase (urease) protein signature 822 835 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 Gene3D Urease, beta subunit 260 391 IPR036461 -
Hepe10g1531 962 NCBIfam urease subunit alpha 400 962 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 SUPERFAMILY Cysteine proteinases 6 112 IPR038765 -
Hepe10g1531 962 SUPERFAMILY Metallo-dependent hydrolases 528 962 IPR032466 -
Hepe10g1531 962 CDD Urease_alpha 399 961 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Hepe10g1531 962 Pfam Urease subunit beta-alpha linker domain 360 393 IPR040881 -
Hepe10g1531 962 Pfam Amidohydrolase family 524 848 IPR006680 GO:0016787(InterPro)
Hepe10g1531 962 Gene3D - 133 253 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 ProSitePatterns Urease active site. 716 732 IPR017950 GO:0009039(InterPro)
Hepe10g1531 962 FunFam Urease 278 396 - -
Hepe10g1531 962 Gene3D - 1 132 - -
Hepe10g1531 962 SUPERFAMILY Urease, beta-subunit 261 389 IPR036461 -
Hepe10g1531 962 ProSiteProfiles OTU domain profile. 5 128 IPR003323 -
Hepe10g1531 962 CDD Urease_gamma 133 229 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Hepe10g1531 962 Gene3D Urease, subunit C, domain 1 401 875 IPR011059 GO:0016810(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1531 K01427 - - csv:101209590 1558.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0558 Hepe-Chr5:7824556 Hepe10g1531 Hepe-Chr10:52051005 6.15e-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1176 . . . . . . . . . Cmo18g00699 . Cma18g00711 . Car18g00656 . Cpe09g00578 . Bhi07g01897 . . . Hepe10g1531 . . . . . . . . . . . Cone8ag0739 . Lsi04g00664 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01356 . Cec11g1440 . Clacu11g1571 Cmu11g1391 Cre11g1812 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49