Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1542 ATGGACAAGATGAAAGGTATGATAGAAGAAATGAAGGAATCGCGCCTTGTGACGCTTAATACTGTAGCTAAGGCTATGCGAAGGTTTGCTGGTGCTGGACAATGGGAAGAAGCTGTGAGAATATTTGATGATTTAGGAACTTTTGGGTTGGAGAAGAACACTGAATCTATGAATGCGTTGCTTGATACTCTGTGCAAAGAGAAGAAGGTCCAGCAAGCTCGACAGGTATATTTGGATCTCAAATCTCATATTTCCCCTAATGCCAACACGTTTAATACGTTCATTCATGGTTGGTGTAAAGTTGATAGGGTCGATGAGGCACATTGGACGTTACAAGAAATGAAAGGACATGGTTATCGACCTTGCGTTATTAGTTATTCAACGATTATCCTATTTTATTGTCGTCGTTACAACTTTAGTAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCAGCAAATGTCATCACTTACACCACTATCATGTGCTCACTAACAAAGTCAGAAGAATTTGAGGAAGCCCTACAAATTGCTGAGAGAATGAAATCTGCTGGATGTGAACCCGATACGCTTTTATATAATTGTTTGATCCATACACTAGGTAGAGCGGGTAAGGTACGAGAAGCTATTCATGTATTTGAAGTAGAAATGCCGAGCAAGAGTGTTTTACCAAATACATCAACCTACAATTCTATGATTTCGATGTACTGTCATCGTGCGCAAGAACAAAAGGCTATGAAACTGCTTGAGGATATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATTCTACCCATTGTTGAAATCCTGCTTTAGAACTGGAAAGACTGACGATATTTTGAACAAGTTATTGGATGACATGATACATAAACATCATCTGAGTCTTGATATATCAACCTATTCCCTTTTAATTCATGGTCTTTGTAGATCAAAAAATTGCGAGTGGGCTTACCAGCTATTTGAGAAGATGATTGCTCAAGATATTAAGCCAAGATACCTTACATGTCAACTGCTTTATGATGAAGTTAAGCTGAAGAACATGGAAGAAGTTGCTGATAGGATTGAAGATATCATGAAAAAATTATGA 1101 38.42 MDKMKGMIEEMKESRLVTLNTVAKAMRRFAGAGQWEEAVRIFDDLGTFGLEKNTESMNALLDTLCKEKKVQQARQVYLDLKSHISPNANTFNTFIHGWCKVDRVDEAHWTLQEMKGHGYRPCVISYSTIILFYCRRYNFSKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGCEPDTLLYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMISMYCHRAQEQKAMKLLEDMEKSGLCKPDVQTFYPLLKSCFRTGKTDDILNKLLDDMIHKHHLSLDISTYSLLIHGLCRSKNCEWAYQLFEKMIAQDIKPRYLTCQLLYDEVKLKNMEEVADRIEDIMKKL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52144414 52146557 - Hsped.10g15420.1 Hepe10g1542 582089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1542 366 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 219 359 IPR051222 -
Hepe10g1542 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Hepe10g1542 366 Pfam PPR repeat family 53 97 IPR002885 -
Hepe10g1542 366 Pfam PPR repeat family 121 168 IPR002885 -
Hepe10g1542 366 Pfam PPR repeat family 191 241 IPR002885 -
Hepe10g1542 366 Gene3D Tetratricopeptide repeat domain 151 219 IPR011990 GO:0005515(InterPro)
Hepe10g1542 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Hepe10g1542 366 SUPERFAMILY TPR-like 40 336 IPR011990 GO:0005515(InterPro)
Hepe10g1542 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 227 IPR002885 -
Hepe10g1542 366 Gene3D Tetratricopeptide repeat domain 220 365 IPR011990 GO:0005515(InterPro)
Hepe10g1542 366 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515(InterPro)
Hepe10g1542 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Hepe10g1542 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Hepe10g1542 366 Pfam PPR repeat 298 328 IPR002885 -
Hepe10g1542 366 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Hepe10g1542 366 NCBIfam pentatricopeptide repeat 231 264 IPR002885 -
Hepe10g1542 366 NCBIfam pentatricopeptide repeat 90 121 IPR002885 -
Hepe10g1542 366 NCBIfam pentatricopeptide repeat 124 157 IPR002885 -
Hepe10g1542 366 NCBIfam pentatricopeptide repeat 304 335 IPR002885 -
Hepe10g1542 366 NCBIfam pentatricopeptide repeat 159 193 IPR002885 -
Hepe10g1542 366 NCBIfam pentatricopeptide repeat 196 229 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1542 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1377 Hepe-Chr2:17467902 Hepe10g1542 Hepe-Chr10:52144414 1.94e-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30