Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1543 ATGGATATTCCTTCTGTAATCGTAAATGCTGGGTTTATTTTTGCATTTTCGATGTGGGTTTTGCTTCGTTTGTGGGTACGAGAGACAGAGAGTGAAAACCCTCAATTCAGAATAAACAGAGCGTTTAAATGGATGACTGATATTACAATCGTTTCTAATGTTGTTATTCCATTTCTGTATTTGGGTTTTGCTGCTTTTGAGTATTGGAATCGCAGAATCGTTTGTTGGGAATTTGCCATTTCTGCTTTTACGTGGATTTTGGCTGCTGGGATTGCTTTTTACTGGAGAAATGGAATGTATCATCAAGGAAAACGATGGCCGTTGATTCTAATGGTTTGGTGGGTTTTCTCTTGTTTCTATGGTTTTGGTTCTTCGATTGTTTATCTGCTTACCCACTTGAAATCTATGGAGTTTTCTCATTTTCTTCTTCCAAAAGGCACTATTGTGGATTTTGCTTCTTTCACTTTGTCTTTGATAATCTGCTGTACTGCACTGGCTGTTAACTATTCCAAGAAACACAGTGATCTTGAGAAGTCGTTGCTTCAAAAAGAGAATGTTTGTTCTTCTGAAGATGATGGTGGTTTCATCAGTCCTGGATTGTGGAGTCAAATTACATTTCAATGGCTGAATCCTCTCTTCAAAAAGGGGAGGATTCAGAAACTTGAATTAGCTCATGTTCCTTGTGTACCTCAATCTGAAACAGCTGAATTTGCTTCATCATTGCTGGAAGAATCGCTTCAGAAAAAGAAAATTGAATCTTCTTTCTTGCCTAAAGCTATAGTTCTAGCCACATGGAAATCCCTGGTCTTAACTGCAATTTTTGCAGGAATCAACACATTAGCATCCTTTATGGGGCCTTTATTAATCACCAACTTTGTGAATTATCTGTTGGGAAAGGGTGATGACTCAAGCAACCGTGACGGGTTGATTCTTGCATTCTTCTTCTTCTTTGCAAAGACATTGGAGTCTCTTACTCAACGGCAGTGGTATTTCGGCACTCACCGTGTCGGTATACAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTATATCTATTAATGCTGCTGGTCCAAGTAATGGTAAAATCATAAATCTAATAAATGTGGATGTTGAAAGAATTGGAGACTTCTCCTGGTATATTCACAAGATTTGGTTGCTTCCTGTTCAAATAGTTCTAGCTCTCATCATCCTTTATAGGAATCTTGGAGCTGCTCCTTCCGTTACTGCTCTTTTGGCCACAATATTTATAATGGTGAGCAACACACCTTTGGCCAATGTTCAAGAAACTCTACACTCAAAGATAATGGAGGCAAAAGACTCCCGAATCAAATTGACATCAGAGACTCTGAAGAACATGAGAGTCTTGAAACTGCATTCTTGGGAACAAACATTTCTGAAGAAGGTCTTGCAACTTAGGGAAGTCGAAAGAAGATGGTTGAAGAGATACCTCTATACATGCTCCGTTATAGCATTTCTCTTTTGGGTTTCACCAACTTTAGTTTCAGTACTTACTTTTGGCGCTTGTGTTGTGATGAAAATCCCTCTAACAGCAGGCACAGTTTTATCGGCCATAGCTACTTTTCGGATCCTACAAGAACCGATTTATAACCTACCAGAGCTAATTTCCATGATTGCTCAAACAAAAGTTTCCCTTGACCGAATTCAAGAGTTCATTCGAGAAGAAGATCAAAGGAAGCTGGTTTATTATCCTCCTTCCAATGCATCAGACATCATGATTGAAATTGAGGCGGGGGAGTATTCATGGGAAGCCGGTGATCTAAATGTTAAGAAAGCGACGATAAAAGTTACAGAGAAGATGCAAATACCAAAAGGTTGCAAGGTCGCGATTTGCGGGTCAGTCGGTTCAGGAAAATCAAGCCTACTTTGTAGTATACTGGGGGAGATCCCACAGATTTCAGGAACACAGATGAAGGTACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCAGGCACTGTTAGAGAGAATGTGCTGTTTGGGAAGGAAATTGACACACATTTTTATGAGGATGTATTAGAAGCATGTGCTTTGAATCAAGATATCAAGTCGTGGCTTGATGGAGATTGTACTTTGTTGGGAGAGAGGGGGGTGAACTTAAGTGGAGGACAAAAGCAGAGGATTCAATTGGCAAGGGCAGTTTATAGTGATGCAGATGTTTACTTCCTGGACGATCCTTTTAGTGCTGTGGACGCATGTACTGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTTTGTCTGGTAAAACTGTCGTATACTCTACTCATCATTTGGAATTCATAGAAGCTGCAGACCTTGTCCTGGTGATGAAAAATGGTCATATTGTTCAATCAGGAAAGTATGCAGAATTAATATCAGACTCAAATGGTGAACTTGCTGGGCACATTGCAGCACATAGAAAATCACTGAATGGAGTTAAACCGTTCAAAGAAGATAAACCTCATCATAAAAGACCATGTCAGACACATCAGATAGAAGCTCTAGATGAAGAATCTTCCATATCCGTTGGAAATGGAGGCCTTTCAGTGAGAACTCAAGAAGAGGAAACTCAAACCGGTCGTGTAAAGTGGAGTGTCTACTCAACCTTCATCAAATCTGCTTATAAAGGAGCTCTTGTTCCTGTCATCCTTCTATGTCAAATTTTGTTTCAAATCCTTCAGATGGGCAGTAATTATTGGATTTCTTGGGCAACAGAAGAAGAAGGCAAGGTCAGCAGAGAGCAGTTGTTAGGGATCTTCACTTTGATGTCCGGCGGGAGCTCCATCTTTATATTAGGCCGGGCTGTTTTGATGGCAACCATTGCTATTGAGACTGCACAACGAATGTTTCTTGGAATGGCGACATCAGTATTTGCAGCACCTATTTCATTTTTTGATGTCAAACCATCAAGCCAAATCCTTAACAGATCATCTACTGATCAAAGCACATTGGATACAGATATCCCTTATAGATTAGGAGGATTGGCTTTTGCACTAATTCAGCTGTTGAGTATCATTATCCTGATGTCCAAGGTTGCATGGCAAGTTTTCCCCCTCTTCCTTGCCGTCCTCGCTATCTCTATATGGTATCAGGGATATTACATCAGTACTGCTAGAGAACTAGCTAGAATGGTTGGGATTCGAAAGGCTCCAATTCTTCATCACTTTTCTGAAACAGTCGTAGGTGCAACGATTATCCGTTGTTTCAAGCAAGAGGATCGTTTCTTGACGAAAATATTGAAGCTAGTTGATGATTATTCTCGTGTGGTTTTTCACAACGCAACTTCAATGGAATGGTTGTGCCTGCGGATCAATTTTCTTTTTGACGTTGTCTTCTTTCTCGCCCTCGTCATCTTAGTGACCCTTCCTAGATCCGCAATCGATCCAAGCTTAGCAGGATTAGCAGCCACATATGGTTTGAACATGAATGTGCTCCAGGCTTGGGTAATTTGGAATTTATGCAATGTCGAGAACAAAATGATATCCGTTGAGAGAATTCTTCAGTTTAGTAACATTGCTTCTGAGGCGCCACCGGTGATCGAAGATTGTAGGCCAATGCCAGAATGGCCAACGGAGGGAAAGATAGAACTCGAGAACCTTCATGTCCAATACCGTCCTAATCTTCCAGTAGTTCTCAAAGGGATCACTTGCACCTTCCCAAAAAAGAAGAAAATTGGAGTTGTTGGTAGGACAGGAAGTGGAAAGTCCACCCTAATCCAAGCACTTTTTAGGGTGGTAGAGCCCTCTGCAGGAAGGATTCTTATAGATGGAGTTGACATTTGCAAAATGGGTCTACATGATCTGAGGTCCAAAATGGGAATTATTCCACAAGACCCAACATTGTTCCAAGGAACCATGAGAACTAACCTAGACCCTTTGCAACAACACACTGATCAAGAAATATGGGAGGTCCTTCACAAGTGTCGATTTGCCGAGATCATAAGAACGGACCAAACAGTTCTCGAAGCACCAGTTGCTGAAGATGGAGAGAATTGGAGTGTTGGACAGAGGCAACTTGTTTGCCTGGCCAGGGTGCTCCTCAAGAAGCGTCGGATTCTCGTGTTAGATGAGGCAACAGCTTCCATTGATACTGCAACAGAAAATATAATTCAAGAAACAATAAGAGAGGAGACAAATGGATGTACAGTTATTACCATAGCTCATCGGATACCGACAGTTATCGACAACGATTTGGTTTTGGTTCTTGATGAAGGCAAGGTCATCGAGTACGATTCGCCATCTCGATTACTCGAGAACAGTTCTTCTACATTTTCAAAGTTGGTGGCAGAATTCTTGAGATCATCATCCAATAGTCACTCACGAACGATGGGGACTTCTGGCGAGACTGACACGAACCGTAGCTGA 4383 41.2 MDIPSVIVNAGFIFAFSMWVLLRLWVRETESENPQFRINRAFKWMTDITIVSNVVIPFLYLGFAAFEYWNRRIVCWEFAISAFTWILAAGIAFYWRNGMYHQGKRWPLILMVWWVFSCFYGFGSSIVYLLTHLKSMEFSHFLLPKGTIVDFASFTLSLIICCTALAVNYSKKHSDLEKSLLQKENVCSSEDDGGFISPGLWSQITFQWLNPLFKKGRIQKLELAHVPCVPQSETAEFASSLLEESLQKKKIESSFLPKAIVLATWKSLVLTAIFAGINTLASFMGPLLITNFVNYLLGKGDDSSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSISINAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIVLALIILYRNLGAAPSVTALLATIFIMVSNTPLANVQETLHSKIMEAKDSRIKLTSETLKNMRVLKLHSWEQTFLKKVLQLREVERRWLKRYLYTCSVIAFLFWVSPTLVSVLTFGACVVMKIPLTAGTVLSAIATFRILQEPIYNLPELISMIAQTKVSLDRIQEFIREEDQRKLVYYPPSNASDIMIEIEAGEYSWEAGDLNVKKATIKVTEKMQIPKGCKVAICGSVGSGKSSLLCSILGEIPQISGTQMKVHGTKAYVPQSAWIQSGTVRENVLFGKEIDTHFYEDVLEACALNQDIKSWLDGDCTLLGERGVNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSGKTVVYSTHHLEFIEAADLVLVMKNGHIVQSGKYAELISDSNGELAGHIAAHRKSLNGVKPFKEDKPHHKRPCQTHQIEALDEESSISVGNGGLSVRTQEEETQTGRVKWSVYSTFIKSAYKGALVPVILLCQILFQILQMGSNYWISWATEEEGKVSREQLLGIFTLMSGGSSIFILGRAVLMATIAIETAQRMFLGMATSVFAAPISFFDVKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQVFPLFLAVLAISIWYQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFKQEDRFLTKILKLVDDYSRVVFHNATSMEWLCLRINFLFDVVFFLALVILVTLPRSAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFSNIASEAPPVIEDCRPMPEWPTEGKIELENLHVQYRPNLPVVLKGITCTFPKKKKIGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKMGLHDLRSKMGIIPQDPTLFQGTMRTNLDPLQQHTDQEIWEVLHKCRFAEIIRTDQTVLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENIIQETIREETNGCTVITIAHRIPTVIDNDLVLVLDEGKVIEYDSPSRLLENSSSTFSKLVAEFLRSSSNSHSRTMGTSGETDTNRS 1460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52149272 52155091 - Hsped.10g15430.1 Hepe10g1543 582090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1543 1460 SUPERFAMILY ABC transporter transmembrane region 887 1183 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe10g1543 1460 CDD ABC_6TM_ABCC_D2 886 1176 IPR044726 GO:0140359(InterPro)
Hepe10g1543 1460 Pfam ABC transporter 609 739 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe10g1543 1460 FunFam ABC transporter C family member 5 853 1182 - -
Hepe10g1543 1460 ProSitePatterns ABC transporters family signature. 712 726 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe10g1543 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1201 1435 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe10g1543 1460 Gene3D ABC transporter type 1, transmembrane domain 855 1182 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe10g1543 1460 Gene3D ABC transporter type 1, transmembrane domain 247 567 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe10g1543 1460 CDD ABCC_MRP_domain2 1199 1419 - -
Hepe10g1543 1460 SMART AAA_5 1227 1418 IPR003593 GO:0016887(InterPro)
Hepe10g1543 1460 SMART AAA_5 613 787 IPR003593 GO:0016887(InterPro)
Hepe10g1543 1460 FunFam Multidrug resistance-associated protein 4 569 826 - -
Hepe10g1543 1460 FunFam ABC transporter C family member 3 1184 1436 - -
Hepe10g1543 1460 CDD ABCC_MRP_domain1 582 786 - -
Hepe10g1543 1460 Pfam ABC transporter transmembrane region 894 1128 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe10g1543 1460 Pfam ABC transporter transmembrane region 269 536 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe10g1543 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 197 1435 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Hepe10g1543 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 269 549 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe10g1543 1460 SUPERFAMILY ABC transporter transmembrane region 263 565 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe10g1543 1460 Gene3D - 576 821 IPR027417 -
Hepe10g1543 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 801 IPR027417 -
Hepe10g1543 1460 CDD ABC_6TM_ABCC_D1 270 557 IPR044746 GO:0140359(InterPro)
Hepe10g1543 1460 FunFam ABC transporter C family member 10 252 565 - -
Hepe10g1543 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 888 1164 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe10g1543 1460 Pfam ABC transporter 1218 1366 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe10g1543 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 810 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe10g1543 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1192 1427 IPR027417 -
Hepe10g1543 1460 Gene3D - 1185 1437 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1543 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1543 Hepe-Chr10:52149272 Hepe10g1866 Hepe-Chr10:55470961 0.0 dispersed
Hepe10g1543 Hepe-Chr10:52149272 Hepe02g1096 Hepe-Chr2:13617156 5.33e-312 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38