Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1560 ATGGATGCCACGACAAGCGAAACGACGGCTATACAATTCCATAGCATTCCTGATCAGTCAGTTTCTGCTATTGTCACCAGTCCCGCCTCGACATTTCCACTACCGAAACGACATTGCTTCGGGGAATCCAACCCGGGTGAATTCCCCTTAGCTGCCAATCCTTCCATTGTTCTTCATGTCCTGACAGCATGTAACTTGGATCCTCAGGACCTTGCAAAGTTAGAGGCAAGATCTTTCATTTCCCTTGCGACGTGTTCGTTCTTTAGACAGCCTGCAAACTTTGCTCCTGACTATGAATTATCGATTTCGGAACTTGCTGCTTTGGATATGTGCCGAAAGAGAGCCATATTCAAACCTATGACAGCAGAACAGCATCAAGCATTGAAGCAAAGATGTGGTGGTTCCTGGAAACTGGTATTGAGGTTTTTCGTGGCTGGAGAAGCATGTTGCAGAAGGGAGAAATTTCTGGCAATAGCAGGACCCGGTCACAGCATCGCGGTCACGTCGAAAGGAGCTGTTTACTCCTTTGGGTCCAACAACTCAGGACAGCTTGGACATGGTACCACTGAAGAAGAATCACGGCCTCGCCTAATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGCCGGGAGGACAATGTTAATCAGCGATGCCGGGCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCAAGTCATTACAACACCGAAGTTGGTCGAATCCCTGAAGGATATATTTGTGGTTCAAGCTGCAATTGGAAATTTCTTCACAGCTGTACTATCAAGAGAAGGTAGGGTGTACACATTTTCTTGGGGAAGTGACAGTAGGCTCGGTCATCAAACCGAACCAAACGACTTGGAACCACGGCCCCTGATGGGAGCGTTAGAAAACACTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTAGCTTGTCATCCTAATGGAATGTCAGTATACTCTGTTGGGTGTGGACTGGGCGGGAAGCTCGGTCACGGTTCAAGGACCGATGAGAAGCACCCACGACTCATTGAACAATTTCAGCTTCTGAATCTCCAACCAGCCGTGGTCGCTGCTGGTGCTTGGCACGCAGCTGTTGTAGGTCGCGACGGTCGAGTTTGTACATGGGGTTGGGGCCGATATGGGTGCCTGGGTCATGGAAATGAGGAGTGTGAATCTTCCCCTAAGGTGGTGGAAGCATTAAGCAACGTTAAAGCTGTTCATGTTGCTACAGGAGATTATACAACATTTGTAGTATCTGATGATGGCGACGTGTATTCTTTCGGTTGCGGAGAATCTTCTAGTCTCGGGCATAATATCGATGTCGCCGAGGAACAGGGTAATCGGCATCCGCACATTCTAAGCCCAGAACTAGTAAGGTCTCTGAAGCAAATTAACGAGCGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCACTGACCGAGTCGGGGAAGTTGTATGCATTTGGTGCTGGAGACAAAGGGCAGCTCGGAGTCGAACTTCTGGCTAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGAACTAAATTAA 1629 48.0 MDATTSETTAIQFHSIPDQSVSAIVTSPASTFPLPKRHCFGESNPGEFPLAANPSIVLHVLTACNLDPQDLAKLEARSFISLATCSFFRQPANFAPDYELSISELAALDMCRKRAIFKPMTAEQHQALKQRCGGSWKLVLRFFVAGEACCRREKFLAIAGPGHSIAVTSKGAVYSFGSNNSGQLGHGTTEEESRPRLIRSLQGIRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVITTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSDSRLGHQTEPNDLEPRPLMGALENTPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPAVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESSSLGHNIDVAEEQGNRHPHILSPELVRSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELLANQTERGNPERVDIELN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52326361 52328645 + Hsped.10g15600.1 Hepe10g1560 582107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1560 542 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 159 231 IPR051210 -
Hepe10g1560 542 Gene3D - 157 329 IPR009091 -
Hepe10g1560 542 Gene3D - 330 540 IPR009091 -
Hepe10g1560 542 Pfam Regulator of chromosome condensation (RCC1) repeat 170 219 IPR000408 -
Hepe10g1560 542 Pfam Regulator of chromosome condensation (RCC1) repeat 386 435 IPR000408 -
Hepe10g1560 542 Pfam Regulator of chromosome condensation (RCC1) repeat 438 489 IPR000408 -
Hepe10g1560 542 Pfam Regulator of chromosome condensation (RCC1) repeat 334 383 IPR000408 -
Hepe10g1560 542 Pfam Regulator of chromosome condensation (RCC1) repeat 223 273 IPR000408 -
Hepe10g1560 542 Pfam Regulator of chromosome condensation (RCC1) repeat 276 325 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 542 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 276 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 386 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 329 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 438 IPR000408 -
Hepe10g1560 542 PRINTS Chromosome condensation regulator RCC1 signature 434 455 IPR000408 -
Hepe10g1560 542 PRINTS Chromosome condensation regulator RCC1 signature 263 279 IPR000408 -
Hepe10g1560 542 PRINTS Chromosome condensation regulator RCC1 signature 279 293 IPR000408 -
Hepe10g1560 542 PRINTS Chromosome condensation regulator RCC1 signature 173 189 IPR000408 -
Hepe10g1560 542 PRINTS Chromosome condensation regulator RCC1 signature 223 239 IPR000408 -
Hepe10g1560 542 PRINTS Chromosome condensation regulator RCC1 signature 376 394 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 171 222 IPR000408 -
Hepe10g1560 542 SUPERFAMILY RCC1/BLIP-II 158 455 IPR009091 -
Hepe10g1560 542 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 373 383 IPR000408 -
Hepe10g1560 542 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 506 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1560 Hepe-Chr10:52326361 HepeContig66g0157 Hepe-ChrContig66:13684980 5.34e-24 dispersed
Hepe10g1560 Hepe-Chr10:52326361 Hepe04g0129 Hepe-Chr4:36262250 6.11e-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44