Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1564 ATGAATCCTCTCTGCTGCATTGCTCCGGTTTCTATTGATCGGGACCGGGCTAATTCGGTTGTCGCCAAATCCCCATCTCACTGTCACTTAGGGCTTGATGCTCCTATTAAAACCTTGAGCTACGGCTCTAAACCCAGCTTTTCTGCTCAGGTTTCGTCGGTTGGGACTGAATCGGACAAGGTTTCTGTCTCTGTCAATCATGATGGGGACGATTCGGTTACTGAAGCTCGGGATTCTAAGGGACTGACCGGCAATGGTGGAGTTAGTGGCACTGTGGCTGGGATTTTGTACAAGTGGGTGAACTATGGGAGAGGTTGGAGGTCCAGATGGTTCGTGTTGGAAGATGGGGTGCTTTCGTATTACAAGATTCATGGTCCTGATAAGATTCTGATGAGCCCTGCTAGAGAGAAGGATGTTAGGGTGATCGGAGAGGATTCTTTGAGGTACATGAGGAAAGCTAATTGGGGGAACACTCGACTCGGATTGTTGAAGAAGCAATGCAAACCTTTTGGGGAAGTTCATTTGAAGGTTTCTTCAGTTCGTGCTAGTAAATCAGATGATAAAAGGCTTTCTATCTTCACTGGAACAAAAACTCTTCACTTGAGATGTATATCGAAGGAAAACAGAGCTGCGTGGATTGATGCTTTGCTGTCTGCCAAAGATCTTTTCCCTAGAATGTTATGCAGCAATGATTTTCTTCCATCCCAGGAGGTGGTTGTTTCGACAGAGAAGCTTCGTTCACGACTGTCACAAGAAGGGATTAATGAGACAGTCATCAATGACTGTGAATCAATTATGCTCTCTGAACTCTCTGAGATTCAAAACCAGTTGAAAGCTCTCCAATATAAGCATGTTGCTCTGTTAGATACGTTGAGGCAATTGGAGACAGAGAAAATAGAACTGGAAACTACTGTTGTGGATGAAACAAAGGAACGGGAGTCTTGCTGTGGACAAGCGAATAGACGATTCAGTGATTTCTATTCTGTTATGTCGGAGGGAAGTGCATCTGATTTTGATGGAGAAAATGAGAGTCAAGATGGAGGTGATGTTGAAACAGATGAAGATGATGGAATGTATTTCGATACCAATGATTTTTTGTCTGCAGAAGCTTTGAGAAGTGCTTCCTATCGCAGTAGGGAATCCTCAGGAGTTTCTTGTGCATATGATAGTGGTTCTTACTTCTCCGACCATCTGCGTGAAGCCGAAAATCAGGTAAGGATGGTGAAATATCCATATGTCAAAAGAAGGGACAGCCTTCCAGATCCGAAGGAGAAAGAGAAGCCTGTTGGCTTATGGTCAATTATCAAAGATAATATTGGAAAGGACTTATCTGGAGTATGTCTACCTGTTTACTTTAATGAGCCACTGTCTTCGTTGCAAAAGTGTTTTGAGGATTTGGAATATTCTTACTTGGTCGATCAAGCGTTTGAATGGGGCAAGCAGGGGAACGACTTGATGAGAATTCTAAAGATTGCTGCTTTCGCCGTTTCTGGCTATGCTTCAACAGAAGGCCGACAATGTAAACCATTTAACCCTCTACTTGGAGAAACCTATGAAGCTGACTATCCAGACAAAGGACTTCGTTTTTTCTCAGAAAAAGTAAGTCACCACCCAATGGTTGTTGCTTGCCATTGTGAGGGAAGAGGCTGGAATTTTTGGGCAGACTCCAATCTCAAGGGTAAGTTTTGGGGGAGATCCATTCAGCTTGATCCCGTGGGTGTCCTTACCTTACAGTTTGAGGATGGGGAGACGTTCCAGTGGACCAAGGTCACTACTTCCATTTACAATATCATACTAGGAAAAATTTACTGTGATCACTATGGTACCATGCGAATCAAAGGCAGTGGCAGGTACTCCTGCAAGCTCAAGTTCAAGGAACAATCTATCATAGATCGGAATCCACATCAGGTCCATGGATTTGTGCAAGACAATAGAACTGGAGAGAAGGTAGCACTGTTGGTGGGAAAGTGGGATGAGGCGATGTACTACGTGTTGGGAGACCCAACCACAAAGCCGAAGGGGTACGATCCGATGACAGAAGCTGTGTTGCTCTGGGAAAGAGACAGAGCTGAAGCTAAAACAAGATATAATCTCTCTCCTTTTGCAATATCCTTGAATGAACTTACACCTGGTTTGATGGAGATACTGCCTCCAACTGACTCGAGGCTTAGGCCAGATCAAAGACATCTTGAAAATGGAGAATATGAGTTGGCAAATGCAGAGAAGTTAAGACTTGAACAGTTGCAGAGACAGGCTCGGAAGTTGCAGGAGAGAGGATGGCAACCGAGATGGTTTCAGAAGGATGAAGATGGTTGTTACCGTTATTTGGGTGGTTATTGGGAAGCTAGAGAGAGACAGAATTGGGAAGAAATTCCTGATATATTTGGGCAACCCACAGATCTGGTACCATGTTCAGGAGAAGAGTAA 2427 44.17 MNPLCCIAPVSIDRDRANSVVAKSPSHCHLGLDAPIKTLSYGSKPSFSAQVSSVGTESDKVSVSVNHDGDDSVTEARDSKGLTGNGGVSGTVAGILYKWVNYGRGWRSRWFVLEDGVLSYYKIHGPDKILMSPAREKDVRVIGEDSLRYMRKANWGNTRLGLLKKQCKPFGEVHLKVSSVRASKSDDKRLSIFTGTKTLHLRCISKENRAAWIDALLSAKDLFPRMLCSNDFLPSQEVVVSTEKLRSRLSQEGINETVINDCESIMLSELSEIQNQLKALQYKHVALLDTLRQLETEKIELETTVVDETKERESCCGQANRRFSDFYSVMSEGSASDFDGENESQDGGDVETDEDDGMYFDTNDFLSAEALRSASYRSRESSGVSCAYDSGSYFSDHLREAENQVRMVKYPYVKRRDSLPDPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQAFEWGKQGNDLMRILKIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMVVACHCEGRGWNFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWTKVTTSIYNIILGKIYCDHYGTMRIKGSGRYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVALLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERDRAEAKTRYNLSPFAISLNELTPGLMEILPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKLQERGWQPRWFQKDEDGCYRYLGGYWEARERQNWEEIPDIFGQPTDLVPCSGEE 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52345426 52353047 + Hsped.10g15640.1 Hepe10g1564 582111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1564 808 ProSiteProfiles PH domain profile. 89 221 IPR001849 -
Hepe10g1564 808 SUPERFAMILY Oxysterol-binding protein-like 425 799 IPR037239 -
Hepe10g1564 808 Coils Coil 738 758 - -
Hepe10g1564 808 Pfam Oxysterol-binding protein 431 784 IPR000648 GO:0008289(InterPro)
Hepe10g1564 808 Coils Coil 277 311 - -
Hepe10g1564 808 MobiDBLite consensus disorder prediction 63 77 - -
Hepe10g1564 808 CDD PH_ORP_plant 92 228 - -
Hepe10g1564 808 Gene3D - 89 223 IPR011993 -
Hepe10g1564 808 Gene3D - 516 683 - -
Hepe10g1564 808 MobiDBLite consensus disorder prediction 333 355 - -
Hepe10g1564 808 SUPERFAMILY PH domain-like 92 225 - -
Hepe10g1564 808 FunFam oxysterol-binding protein-related protein 1D isoform X1 516 689 - -
Hepe10g1564 808 MobiDBLite consensus disorder prediction 58 82 - -
Hepe10g1564 808 SMART PH_update 90 223 IPR001849 -
Hepe10g1564 808 FunFam Oxysterol-binding protein-related protein 2A 727 797 - -
Hepe10g1564 808 Pfam Pleckstrin homology domain 97 216 - -
Hepe10g1564 808 Gene3D - 727 793 - -
Hepe10g1564 808 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 89 770 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1564 K20456 - - csv:101204827 1583.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2317 Hepe-Chr2:67229099 Hepe10g1564 Hepe-Chr10:52345426 5.52e-318 dispersed
Hepe06g1148 Hepe-Chr6:60708847 Hepe10g1564 Hepe-Chr10:52345426 7.88e-266 dispersed
Hepe10g1247 Hepe-Chr10:47828331 Hepe10g1564 Hepe-Chr10:52345426 2.75e-37 dispersed
Hepe10g1564 Hepe-Chr10:52345426 Hepe06g1659 Hepe-Chr6:67532167 6.32e-273 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010393 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32