Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1565 ATGGCGAGCGCGCGCTCCGTTGGTACCTTCACGAGCCTACCCAATCGGCCCGGCGATGTTTGCTGCATTTTCCGGTCACGGAGTGCGGTGGTTCAGTCGGAAATGGGAGGTTCTAGATACTTTTTCAGACCTACGAATCCTCGTTTGCTTCACAGTAAAACATCTATTGCAGCAATTGAAAACGAATTCTCCGATAGCTCGCAGGGTGTTCAATTCGGTGGTGAAGAGTTTGTGTCAAGATTATTGGATAGAAGATGGACGTTGGCTAATCCCAATTCCAAAATAAACAAAGTTATGTTCTCAACTGCAGATTCAAATCTCGATGATTCACCAGCCAGTCATCTGTGCTTGGCAGTAGATACTGATATTTGTACGTCTAATGGTGTATTGAGGACAGATTATTCAGAGCAGTCATTCTATGTTGTTAGGGATGATTTATTGCACCCTCTAATTAATGGTAACAAGGCAAGAAAACTGGACGGAGTTCTACCTCTTATTGAAGATAATTCAGTGACTGATGTGGTAACATGTGGGGGTTGTCAAAGTGCACATGCAGCTGCTACTGCTGTTTTATGTTCAGAAAGAGGTCTGAGGTCACATTTACTTCTACGAGGAGAGCAACCAGAACTCTTAACTGGATACAACTTAATGTCAACAATATATGGAAACGTCACATATGTTCCCAGATCTATTTATGCCAATAGGGAAAAAATGCTCAAAAGTCAAGCTGATTTGGTAGCAGGTAGTAGTGGCAGTATCTTATGGTTCGATGATATTTTTCCATCTTCTCTCACGAAGCAACCATGTTCTGCTACAAATTCTGTGCAAATTGATTATGATTTTCATAGAAGGGCTAGAAAGCATGGAAGAAAGGTTATAGTTATCAATGAAGGAGCTGGAGATGCTATCGCCTTGCTAGGTTTGATTCGATTGGTGAAGTACCTTTCCCAGGATCATTTACTTGGGAAACAGAGGGCTGTTAAGTTTGTTGTAGATGCTGGCACTGGGACAACTGCTATTGGTTTGGGTCTTGGAGCTCTGTGTTTAGGGCTCCCGTGGGAGGTAACTGCAGTGATGTTGGCTGATAGAATCGATGGGTATAAACGGCAGGAGAAGCGTTTGATTTTTGAATTCAGGAAGCATTTTGGCTATCCTGTTGACCTAGGCAAGGATGAAGTAAATGGGGGAATTGTAAATTGGGTAGAGCGTTTCCGTCCAAGAAAATTTGGCAATGTGCTGGATGGGGAAGTGGAGACGTGCAGACAAGTTGCTCAGAAAACCGGTATTCTTGTTGATCCTATTTACACTCTAGCTGCTTGGGAAATGGCTACTTTTCTTTCTCAGAAGGGAGCCAACGCGGATGCAGATGTGGTGGTATTGCTTCATACCGGTGGTACCCTAGGCATGTTTGGAATAGCTCAAAGGTATAAATCTTACTTTAATGACCTAAAAAATGTGTTCCCTATTTAA 1470 42.86 MASARSVGTFTSLPNRPGDVCCIFRSRSAVVQSEMGGSRYFFRPTNPRLLHSKTSIAAIENEFSDSSQGVQFGGEEFVSRLLDRRWTLANPNSKINKVMFSTADSNLDDSPASHLCLAVDTDICTSNGVLRTDYSEQSFYVVRDDLLHPLINGNKARKLDGVLPLIEDNSVTDVVTCGGCQSAHAAATAVLCSERGLRSHLLLRGEQPELLTGYNLMSTIYGNVTYVPRSIYANREKMLKSQADLVAGSSGSILWFDDIFPSSLTKQPCSATNSVQIDYDFHRRARKHGRKVIVINEGAGDAIALLGLIRLVKYLSQDHLLGKQRAVKFVVDAGTGTTAIGLGLGALCLGLPWEVTAVMLADRIDGYKRQEKRLIFEFRKHFGYPVDLGKDEVNGGIVNWVERFRPRKFGNVLDGEVETCRQVAQKTGILVDPIYTLAAWEMATFLSQKGANADADVVVLLHTGGTLGMFGIAQRYKSYFNDLKNVFPI 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52354259 52358587 + Hsped.10g15650.1 Hepe10g1565 582112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1565 489 Gene3D - 154 256 IPR036052 -
Hepe10g1565 489 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 80 481 IPR027278 GO:0019148(PANTHER)
Hepe10g1565 489 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 137 476 IPR036052 -
Hepe10g1565 489 FunFam D-cysteine desulfhydrase 2 mitochondrial 279 479 - -
Hepe10g1565 489 Gene3D - 274 479 IPR036052 -
Hepe10g1565 489 FunFam D-cysteine desulfhydrase 2, mitochondrial 154 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1565 K05396 - - csv:101217882 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2553 Hepe-Chr7:69947715 Hepe10g1565 Hepe-Chr10:52354259 2.48e-15 dispersed
Hepe07g2554 Hepe-Chr7:69954855 Hepe10g1565 Hepe-Chr10:52354259 1.06e-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g597 . . . . . . Bma14g01834 . . Cmo18g00719 . Cma18g00731 . Car18g00681 . Cpe09g00557 . Bhi07g01837 . . Lac13g0114 Hepe10g1565 . . Cla05g02619 Cam05g2806 Cec05g2842 Cco05g2874 Clacu05g2810 Cmu05g2658 Cre05g2774 Cone13ag1095 Cone19ag1085 . . Lsi04g00632 Csa05g02255 Chy10g00825 Cme10g00606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010790 0 3 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32