Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1568 ATGAAGCTCCGTTCATGGCTACTCCCCTGCGCCACCGCCACCGCCACCTCTGAACCCATTAAACCGCCTCAATCCTCCTCCTTCTTAATTTCCGACGCCAGCGGCTTTTCCGACATGTCGGCCAACTCTTCATTGTCGTCGTCGTCGTCGACGCCTAGTTCCGACACTAGCTATTCCAGTCTCCAAAGCAATCTCTCCCTTCAGTCCCTACCGTCGATTCCATCTCTTCAAAAACTCCCCACCGCCACCGATTCCCTAAACGTCGCCGTTTCTCAACTCAACCTCGCCTCCAATTTCAACCTCCCAATCTCTCATCTCGCCGTCCACGGCGCCCATCTCTACGTCGCCACCGCCCACGAAATCAACGTCTACGATCGAACCACCTTCTCCCACGTCACCTCATTCAACGCTCGAGATTCCTCCTCCGGCTCCGTCAAGGGAATCGCCTTCCTCAACGGCGAAATCCTCACTTCTCACCAAGACGGCAAAATCCGCGTCTGGAATTTAACGAACAATTCACACTTCAAATTGGTCAACACTCTCCCTACAGTCAACGACCGCCTCCGCCGATTCATCCTCCCGAAGAATTACGTCAACGTCCGCCGTCACAAGAAGGTCCTCTGGATCCAACACGCCGACGCCGTCACCGGACTCGCCGTCAACGGCGAGTCGATCTACTCTGTTTCTTGGGATCGGAGTTTGAAAATCTGGCGTGGCTCCGACCACCGCTGCGTGGAGTCCGTGAAGGCAGCGCACGAGGACGCCGTGAACGCAGTCGCCGTCTCCGCCGACGGAACTGTCTACACCGGATCCGCCGATCGGAGAATCCGAGTCTGGTCGAAACCGGCGGGGGAGAAACGACATATCTTGATAGCGACATTAGAGAAGCACAAATCAGCGGTGAATGCATTGGCGTTAAACGACGACGGTTCGTTGCTATTCTCCGGCGCGTGTGACCGGTCCGTTCTGGTTTGGGAAAGAGAAGACAGCGCGAATCACATGGCGGTGATCGGAGCATTGAGGGGGCACAGAAATGCCATACTGTGTTTGATCTACGTCTCAGATTTGCTGTTGAGTGGTTCCGCGGATCGGACGGTGAGGGTTTGGCAACGTGGAGGAGATGGGGGATTTAATTGCTTGTCAGTAATGGAGGGGCATAAAAAACCGGTGAAATCGCTGGTGGTGGTATCGGAGGGGTTGGCAAACGGCGTCGTATCGGTGTGTAGTGGGAGTCTTGATGGGGAGCTTAAAGCGTGGAAACTCTCGTTTTCGAATCTTAATAGTCCATTGCCGAATTCGAATATTAAGAAATGGAGCTAA 1320 54.39 MKLRSWLLPCATATATSEPIKPPQSSSFLISDASGFSDMSANSSLSSSSSTPSSDTSYSSLQSNLSLQSLPSIPSLQKLPTATDSLNVAVSQLNLASNFNLPISHLAVHGAHLYVATAHEINVYDRTTFSHVTSFNARDSSSGSVKGIAFLNGEILTSHQDGKIRVWNLTNNSHFKLVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNGESIYSVSWDRSLKIWRGSDHRCVESVKAAHEDAVNAVAVSADGTVYTGSADRRIRVWSKPAGEKRHILIATLEKHKSAVNALALNDDGSLLFSGACDRSVLVWEREDSANHMAVIGALRGHRNAILCLIYVSDLLLSGSADRTVRVWQRGGDGGFNCLSVMEGHKKPVKSLVVVSEGLANGVVSVCSGSLDGELKAWKLSFSNLNSPLPNSNIKKWS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52386074 52387622 + Hsped.10g15680.1 Hepe10g1568 582115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1568 439 SUPERFAMILY WD40 repeat-like 113 422 IPR036322 GO:0005515(InterPro)
Hepe10g1568 439 FunFam BnaA09g28200D protein 198 284 - -
Hepe10g1568 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 280 - -
Hepe10g1568 439 Gene3D - 287 434 IPR015943 GO:0005515(InterPro)
Hepe10g1568 439 Pfam WD domain, G-beta repeat 210 237 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 Pfam WD domain, G-beta repeat 337 369 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 Pfam WD domain, G-beta repeat 378 419 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 Pfam WD domain, G-beta repeat 250 280 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 326 - -
Hepe10g1568 439 Gene3D - 80 186 IPR015943 GO:0005515(InterPro)
Hepe10g1568 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 289 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Hepe10g1568 439 PRINTS G protein beta WD-40 repeat signature 407 421 IPR020472 -
Hepe10g1568 439 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Hepe10g1568 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 38 422 IPR045182 -
Hepe10g1568 439 SMART WD40_4 333 370 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 SMART WD40_4 241 280 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 SMART WD40_4 202 238 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 SMART WD40_4 287 326 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 SMART WD40_4 128 168 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 SMART WD40_4 376 420 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 Gene3D - 196 286 IPR015943 GO:0005515(InterPro)
Hepe10g1568 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 370 IPR001680 GO:0005515(InterPro)
Hepe10g1568 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1568 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2252 Hepe-Chr7:66925098 Hepe10g1568 Hepe-Chr10:52386074 1.55e-54 dispersed
Hepe10g1568 Hepe-Chr10:52386074 Hepe10g0885 Hepe-Chr10:23858473 7.58e-34 transposed
Hepe10g1568 Hepe-Chr10:52386074 HepeContig66g0022 Hepe-ChrContig66:3107357 7.58e-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49