Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1588 ATGGGTCTCTCAAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTGCCAGTGCTTTTGATGAACACAGTAATGTCAATGGCTTTCTTGAAGAACTTGGTTAGATCTGTGATTCAAATGATTAGTGCAAGTGGGAATCCTTCGAATTCTGAGGAAGAATTCGATTGGGAAAATGGAAGAGAGAGAAGAATTTCAAATACCCAATTCAAATCCTTGCGCCAAAGCTTCTTCAATGGTGGAGCAGAGAAGAATTGCTCTGCTTCGAAGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCAGACGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGCCCTCTCTGTCGCTCTATTGAATAG 414 41.55 MGLSNFPPSAEGVLLLPVLLMNTVMSMAFLKNLVRSVIQMISASGNPSNSEEEFDWENGRERRISNTQFKSLRQSFFNGGAEKNCSASKAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCRSIE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52562972 52564637 + Hsped.10g15880.1 Hepe10g1588 582135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1588 137 SUPERFAMILY RING/U-box 91 135 - -
Hepe10g1588 137 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Hepe10g1588 137 CDD RING-H2 92 134 - -
Hepe10g1588 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 137 IPR013083 -
Hepe10g1588 137 PANTHER - 1 136 IPR044249 -
Hepe10g1588 137 Pfam Ring finger domain 91 134 IPR001841 -
Hepe10g1588 137 SMART ringv_2 91 134 IPR011016 GO:0008270(InterPro)
Hepe10g1588 137 SMART ring_2 92 133 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1588 K16285 - - csv:101214299 231.491
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g638 . . . . . . . . . Cmo18g00766 . . . Car18g00696 Sed06g1693 . Cpe01g01571 Bhi07g01794 Tan04g0160 Cmetu10g1376 . Hepe10g1588 . . . . . . . . . . Cone19ag1068 . . Lsi04g00599 . . Cme10g00580 . . . . . . . . . . . Cma04g01774 . Car04g01798 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010996 1 1 0 0 0 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31