Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1622 ATGGAAGAAATGTACGGGTTGCAATCGACGGCGGACTATTCGGATAAGGCCTTGATGTCACCGGAGAATCTGATTCTGCCGCCGGATTATCAGAGCCTTCTCGCAAGCTCCGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAATTGCTTTCGGCGGCGGCGTCCGCGATATCCGAAGCCGAAGCTGCATCGATCACGCCGGAATTTCAACGTCAAGAAGATATGGTGAACGTGATCAAAGCTAAGATTTCTTCTCATCCGATTTATCCTCGTTTGCTCGACGCCTATATCGACTGCCAAAAGGTTGGAGCGCCTCCGGAGATTGCACATTTGTTAGAAGGAATCCGTCGAGAAAGCGACCTTTGTAACCGTAATTCTGTCACCACGTGCTTAGGCGTCGATCCTGAGCTCGACGAATTCATGGAAACGTATTGCGAAATATTGGTGAAGTACAAATCAGATCTCAAAACGCCTTTCGACGAAGCAACCACGTTCTTGAATAAGATCGAACTGCAACTTAGTAGCCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGTGCTGTGTCGTCAGAGGAAGAGTTGAGCGGAGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTAGATTTGGAAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCCTTGAATGGTGGAGTGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTTGCAGAAAGAACAGGCCTAGACCAAAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGTATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAAGACTGA 975 46.97 MEEMYGLQSTADYSDKALMSPENLILPPDYQSLLASSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEFQRQEDMVNVIKAKISSHPIYPRLLDAYIDCQKVGAPPEIAHLLEGIRRESDLCNRNSVTTCLGVDPELDEFMETYCEILVKYKSDLKTPFDEATTFLNKIELQLSSLCNGAFSRSLSDEGAVSSEEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLLEWWSVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52932223 52940328 - Hsped.10g16220.1 Hepe10g1622 582169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1622 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Hepe10g1622 324 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
Hepe10g1622 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g1622 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g1622 324 Gene3D - 239 313 - -
Hepe10g1622 324 SUPERFAMILY Homeodomain-like 241 316 IPR009057 -
Hepe10g1622 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g1622 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g1622 324 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Hepe10g1622 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Hepe10g1622 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe10g1622 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe10g1622 324 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Hepe10g1622 324 FunFam Homeobox protein knotted-1-like 2 245 307 - -
Hepe10g1622 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe10g1622 324 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2576 Hepe-Chr7:70246597 Hepe10g1622 Hepe-Chr10:52932223 1.52e-07 dispersed
Hepe08g1369 Hepe-Chr8:16039618 Hepe10g1622 Hepe-Chr10:52932223 5.20e-79 dispersed
Hepe10g0032 Hepe-Chr10:293584 Hepe10g1622 Hepe-Chr10:52932223 1.57e-123 dispersed
Hepe10g0232 Hepe-Chr10:2468647 Hepe10g1622 Hepe-Chr10:52932223 4.58e-29 dispersed
Hepe08g2254 Hepe-Chr8:62294805 Hepe10g1622 Hepe-Chr10:52932223 1.64e-87 transposed
Hepe10g1622 Hepe-Chr10:52932223 Hepe09g0208 Hepe-Chr9:1730709 2.97e-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56534 PF03791 KNOX2 4.00E-23 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1622 - - - 0.0