Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe10g1628 | ATGAACCATCTCTTTGAACTTCCTGAACAGATTTGTTATGTGCAATGTGGAATCTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGCGGTGTCGGTGACGTGCGGCCACTGCTCGAGCCTCCTTTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTCTTGCTCGCAATGTGCCTAAAGAAGCTTGTGGAGAAATGAATTCAGGGAAGTGCTTTGACAGTTTCAAGAGACCAAACTTGAAATTCTCTGAGTATGAAGTTGAAGAAAGCTTGATTCCTGTGACACCTCCTGTTGTAAACAAACCTCCTCAGAAAAGACAGCGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATTAGAAGGCTCAAAGCTCAAAATCCTCAAATGACTCACAAGGATGCCTTCAGAACAGCAGCAAAAAATTGGGCAAATTTCCCTCCAATCCTAGAAAAGGAAGACACAGAGAGATGCAATCAGATCGAGGAAAATGAGATTTGGAACACTGAAAATCCTGAGATTCACAAGGATGGAAAGTGCTTCCCAAGGCATTCAGTTTTGACATAA | 603 | 43.62 | MNHLFELPEQICYVQCGICTTILLVSVPCSSLSMAVSVTCGHCSSLLSVNMMKATLVPLHFLSSLARNVPKEACGEMNSGKCFDSFKRPNLKFSEYEVEESLIPVTPPVVNKPPQKRQRAPSAYNCFIKDEIRRLKAQNPQMTHKDAFRTAAKNWANFPPILEKEDTERCNQIEENEIWNTENPEIHKDGKCFPRHSVLT | 200 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 53009522 | 53011193 | + | Hsped.10g16280.1 | Hepe10g1628 | 582175 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe10g1628 | 200 | SUPERFAMILY | HMG-box | 103 | 160 | IPR036910 | - | |
| Hepe10g1628 | 200 | CDD | HMG-box_SF | 119 | 160 | - | - | |
| Hepe10g1628 | 200 | Pfam | YABBY protein | 8 | 161 | IPR006780 | GO:0007275(InterPro) | |
| Hepe10g1628 | 200 | Gene3D | High mobility group box domain | 109 | 191 | IPR036910 | - | |
| Hepe10g1628 | 200 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 171 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe08g2532 | Hepe-Chr8:66885807 | Hepe10g1628 | Hepe-Chr10:53009522 | 5.36e-35 | dispersed | |
| Hepe09g0669 | Hepe-Chr9:6330487 | Hepe10g1628 | Hepe-Chr10:53009522 | 5.99e-38 | dispersed | |
| Hepe10g1628 | Hepe-Chr10:53009522 | Hepe10g1805 | Hepe-Chr10:54818050 | 2.81e-13 | dispersed | |
| Hepe10g1628 | Hepe-Chr10:53009522 | Hepe06g1651 | Hepe-Chr6:67400673 | 2.08e-39 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 56535 | PF04690 | YABBY | 1.10E-55 | CL0114 | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe10g1628 | K25796 | - | csv:101211641 | 342.428 |